A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 27-Oct-2021 number of released structures: 11731
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NDB ID: PD0057  PDB ID: 1QP0 


Base Pair Morphology Parameters

CSV Format

Model NumberPair NumberPair NameShearStretchStaggerBucklePropellorOpening
11M_DA700:DT715_M0.1190.04-0.336-18.8411.435-6.822
15M_DA704:DT711_M0.05-0.1510.012-0.495-1.9434.109
16M_DA705:DT710_M0.1350.011-0.0646.891-10.152.341
12M_DC701:DG714_M0.551-0.3210.546-8.693.1-2.334
14M_DC703:DG712_M-0.041-0.2650.0753.345-20.8270.106
17M_DC706:DG709_M-0.108-0.14-0.16818.974-12.999-0.01
18M_DC707:DG708_M0.3-0.191-0.47921.139-15.8370.129
114M_DC713:DG702_M-0.141-0.210.301-4.2934.121-2.357
13M_DG702:DC713_M0.141-0.210.3014.2934.121-2.357
19M_DG708:DC707_M-0.3-0.191-0.479-21.139-15.8370.129
110M_DG709:DC706_M0.108-0.14-0.168-18.974-12.999-0.01
113M_DG712:DC703_M0.041-0.2650.075-3.345-20.8270.106
115M_DG714:DC701_M-0.551-0.3210.5468.693.1-2.334
111M_DT710:DA705_M-0.1350.011-0.064-6.891-10.152.341
112M_DT711:DA704_M-0.05-0.1510.0120.495-1.9434.109
116M_DT715:DA700_M-0.1190.04-0.33618.8411.435-6.822

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.