A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 27-Oct-2021 number of released structures: 11731
Search for released structures

NDB ID: PD0057  PDB ID: 1QP0 


Base Pair Morphology Step Parameters

CSV Format

Model NumberStep NumberStep NameShiftSlideRiseTiltRollTwistX-DisplacementY-DisplacementHelical RiseInclinationTipHelical Twist
11MM_DA700DC701:DG714DT715_MM0.456-0.9263.197-8.9115.18624.878-3.225-3.1032.63711.43219.64226.899
15MM_DA704DA705:DT710DT711_MM-0.5160.5483.275-1.0630.34735.5090.8470.693.2930.5681.74335.526
16MM_DA705DC706:DG709DT710_MM0.276-0.5083.045-4.0686.0732.26-1.831-1.1142.8510.7537.20633.056
12MM_DC701DG702:DC713DG714_MM-1.085-0.8363.1340.213-6.9934.91-0.3691.8053.23-11.508-0.35135.582
14MM_DC703DA704:DT711DG712_MM1.2941.1663.672-0.4454.22734.4131.216-2.253.7687.110.74834.666
17MM_DC706DC707:DG708DG709_MM-0.5220.453.4575.888-3.63436.4031.2161.6433.277-5.752-9.32137.033
18MM_DC707DG708:DC707DG708_MM0.01.4915.2040.055.8584.446-5.3910.01.91585.8150.056.02
114MM_DC713DG714:DC701DG702_MM1.085-0.8363.134-0.213-6.9934.91-0.369-1.8053.23-11.5080.35135.582
13MM_DG702DC703:DG712DC713_MM-0.846-0.1463.3233.7690.66335.736-0.3321.913.2171.076-6.1235.934
19MM_DG708DG709:DC706DC707_MM0.5220.453.457-5.888-3.63436.4031.216-1.6433.277-5.7529.32137.033
110MM_DG709DT710:DA705DC706_MM-0.276-0.5083.0454.0686.0732.26-1.8311.1142.8510.753-7.20633.056
113MM_DG712DC713:DG702DC703_MM0.846-0.1463.323-3.7690.66335.736-0.332-1.913.2171.0766.1235.934
115MM_DG714DT715:DA700DC701_MM-0.456-0.9263.1978.9115.18624.878-3.2253.1032.63711.432-19.64226.899
111MM_DT710DT711:DA704DA705_MM0.5160.5483.2751.0630.34735.5090.847-0.693.2930.568-1.74335.526
112MM_DT711DG712:DC703DA704_MM-1.2941.1663.6720.4454.22734.4131.2162.253.7687.11-0.74834.666

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.