1QP4: Base Pair Morphology Parameters

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As of 31-May-2023 number of released structures: 12820

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NDB ID: PD0058 PDB ID: 1QP4

Base Pair Morphology Parameters

CSV Format

Model Number	Pair Number	Pair Name	Shear	Stretch	Stagger	Buckle	Propellor	Opening
1	1	M_DA700:DT715_M	0.458	0.039	-0.083	-17.433	1.952	-4.969
1	5	M_DA704:DT711_M	0.499	-0.088	0.069	2.116	-1.752	2.72
1	6	M_DA705:DT710_M	0.182	-0.129	0.164	10.03	-7.994	0.5
1	10	M_DA709:DT706_M	0.059	-0.189	-0.125	-20.11	-14.021	-2.415
1	2	M_DC701:DG714_M	0.212	-0.21	0.048	-4.153	6.62	-2.662
1	4	M_DC703:DG712_M	-0.059	-0.225	0.158	4.275	-13.141	-1.782
1	8	M_DC707:DG708_M	-0.2	-0.185	-0.281	11.773	-7.683	-1.842
1	14	M_DC713:DG702_M	-0.199	-0.276	0.292	-2.622	-0.884	-4.664
1	3	M_DG702:DC713_M	0.199	-0.276	0.292	2.622	-0.884	-4.664
1	9	M_DG708:DC707_M	0.2	-0.185	-0.281	-11.773	-7.683	-1.842
1	13	M_DG712:DC703_M	0.059	-0.225	0.158	-4.275	-13.141	-1.782
1	15	M_DG714:DC701_M	-0.212	-0.21	0.048	4.153	6.62	-2.662
1	7	M_DT706:DA709_M	-0.059	-0.189	-0.125	20.11	-14.021	-2.415
1	11	M_DT710:DA705_M	-0.182	-0.129	0.164	-10.03	-7.994	0.5
1	12	M_DT711:DA704_M	-0.499	-0.088	0.069	-2.116	-1.752	2.72
1	16	M_DT715:DA700_M	-0.458	0.039	-0.083	17.433	1.952	-4.969

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.