A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 22-Jun-2022 number of released structures: 12128
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NDB ID: PD0058  PDB ID: 1QP4 


Base Pair Morphology Parameters

CSV Format

Model NumberPair NumberPair NameShearStretchStaggerBucklePropellorOpening
11M_DA700:DT715_M0.4580.039-0.083-17.4331.952-4.969
15M_DA704:DT711_M0.499-0.0880.0692.116-1.7522.72
16M_DA705:DT710_M0.182-0.1290.16410.03-7.9940.5
110M_DA709:DT706_M0.059-0.189-0.125-20.11-14.021-2.415
12M_DC701:DG714_M0.212-0.210.048-4.1536.62-2.662
14M_DC703:DG712_M-0.059-0.2250.1584.275-13.141-1.782
18M_DC707:DG708_M-0.2-0.185-0.28111.773-7.683-1.842
114M_DC713:DG702_M-0.199-0.2760.292-2.622-0.884-4.664
13M_DG702:DC713_M0.199-0.2760.2922.622-0.884-4.664
19M_DG708:DC707_M0.2-0.185-0.281-11.773-7.683-1.842
113M_DG712:DC703_M0.059-0.2250.158-4.275-13.141-1.782
115M_DG714:DC701_M-0.212-0.210.0484.1536.62-2.662
17M_DT706:DA709_M-0.059-0.189-0.12520.11-14.021-2.415
111M_DT710:DA705_M-0.182-0.1290.164-10.03-7.9940.5
112M_DT711:DA704_M-0.499-0.0880.069-2.116-1.7522.72
116M_DT715:DA700_M-0.4580.039-0.08317.4331.952-4.969

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.