1QP4: Base Pair Morphology Step Parameters

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As of 31-May-2023 number of released structures: 12820

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NDB ID: PD0058 PDB ID: 1QP4

Base Pair Morphology Step Parameters

CSV Format

Model Number	Step Number	Step Name	Shift	Slide	Rise	Tilt	Roll	Twist	X-Displacement	Y-Displacement	Helical Rise	Inclination	Tip	Helical Twist
1	1	MM_DA700DC701:DG714DT715_MM	0.421	-0.771	3.191	-3.982	1.808	25.363	-2.216	-2.015	3.029	4.079	8.983	25.731
1	5	MM_DA704DA705:DT710DT711_MM	-0.467	0.33	3.241	-2.096	0.423	32.785	0.512	0.469	3.267	0.749	3.708	32.853
1	6	MM_DA705DT706:DA709DT710_MM	0.286	-0.952	3.183	-3.555	7.514	31.918	-2.877	-1.072	2.844	13.383	6.332	32.955
1	10	MM_DA709DT710:DA705DT706_MM	-0.286	-0.952	3.183	3.555	7.514	31.917	-2.877	1.072	2.844	13.383	-6.332	32.955
1	2	MM_DC701DG702:DC713DG714_MM	-0.905	-0.875	3.332	-1.438	-2.997	31.819	-1.026	1.372	3.435	-5.448	2.613	31.988
1	4	MM_DC703DA704:DT711DG712_MM	1.166	1.177	3.559	3.343	5.184	38.924	1.056	-1.284	3.763	7.72	-4.979	39.391
1	8	MM_DC707DG708:DC707DG708_MM	0.0	1.288	5.129	0.0	45.025	14.306	-5.593	0.0	2.821	73.277	0.0	47.13
1	14	MM_DC713DG714:DC701DG702_MM	0.905	-0.875	3.332	1.438	-2.997	31.819	-1.026	-1.372	3.435	-5.448	-2.613	31.988
1	3	MM_DG702DC703:DG712DC713_MM	-0.587	-0.064	3.395	1.349	-2.622	38.206	0.242	1.069	3.37	-3.999	-2.057	38.315
1	9	MM_DG708DA709:DT706DC707_MM	0.703	0.233	3.729	-2.815	-0.392	31.894	0.503	-1.85	3.652	-0.711	5.11	32.017
1	13	MM_DG712DC713:DG702DC703_MM	0.587	-0.064	3.395	-1.349	-2.622	38.206	0.242	-1.069	3.37	-3.999	2.057	38.315
1	15	MM_DG714DT715:DA700DC701_MM	-0.421	-0.771	3.191	3.982	1.808	25.363	-2.216	2.015	3.029	4.079	-8.983	25.731
1	7	MM_DT706DC707:DG708DA709_MM	-0.703	0.233	3.729	2.815	-0.392	31.894	0.503	1.85	3.652	-0.711	-5.11	32.017
1	11	MM_DT710DT711:DA704DA705_MM	0.467	0.33	3.241	2.096	0.423	32.785	0.512	-0.469	3.267	0.749	-3.708	32.853
1	12	MM_DT711DG712:DC703DA704_MM	-1.166	1.177	3.559	-3.343	5.184	38.924	1.056	1.284	3.763	7.72	4.979	39.391

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.