1QPY: Base Pair Morphology Parameters

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As of 11-May-2022 number of released structures: 12077

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NDB ID: UP0001 PDB ID: 1QPY

Base Pair Morphology Parameters

CSV Format

Model Number	Pair Number	Pair Name	Shear	Stretch	Stagger	Buckle	Propellor	Opening
1	3	A_APN4:TP13_B	-0.015	-0.171	-0.285	-5.167	8.904	-3.259
1	6	A_CP11:GPN6_B	0.326	-0.044	0.002	6.412	-2.115	-3.774
1	2	A_CP15:GPN2_B	0.131	-0.359	-0.274	4.43	3.71	-3.535
1	5	A_GPN2:CP15_B	-0.059	-0.184	-0.198	-4.018	4.054	-3.561
1	1	A_GPN6:CP11_B	-0.344	-0.268	-0.122	-5.22	-3.175	-4.135
1	4	A_TP13:APN4_B	0.142	-0.121	-0.324	6.326	9.226	-3.308
1	9	C_APN4:TP13_D	0.093	-0.159	-0.145	7.957	2.951	-1.437
1	12	C_CP11:GPN6_D	-0.313	-0.386	0.27	-3.1	2.485	-4.872
1	8	C_CP15:GPN2_D	-0.23	-0.265	-0.173	-5.704	3.687	-6.125
1	11	C_GPN2:CP15_D	-0.076	-0.313	-0.29	4.487	2.918	-6.165
1	7	C_GPN6:CP11_D	-0.019	-0.296	0.399	2.076	3.337	-4.881
1	10	C_TP13:APN4_D	-0.406	-0.181	-0.192	-8.334	2.146	-1.322
1	15	E_APN4:TP13_F	0.117	-0.119	-0.313	-5.189	7.018	-0.347
1	18	E_CP11:GPN6_F	0.102	0.278	0.205	7.625	-2.889	-0.809
1	14	E_CP15:GPN2_F	0.279	-0.395	-0.32	4.679	1.9	-0.598
1	17	E_GPN2:CP15_F	-0.128	0.02	-0.087	-1.942	3.01	-0.476
1	13	E_GPN6:CP11_F	-0.194	-0.302	-0.113	-6.298	-5.01	-0.854
1	16	E_TP13:APN4_F	0.224	0.029	-0.236	8.89	7.393	-0.442
1	21	G_APN4:TP13_H	0.104	-0.25	-0.023	5.036	4.188	-0.712
1	24	G_CP11:GPN6_H	-0.485	-0.118	0.093	-5.085	1.006	-4.401
1	20	G_CP15:GPN2_H	-0.339	-0.424	-0.041	-7.592	5.632	-5.71
1	23	G_GPN2:CP15_H	-0.09	-0.155	-0.414	2.175	3.075	-5.502
1	19	G_GPN6:CP11_H	-0.281	-0.471	0.583	1.37	4.982	-4.576
1	22	G_TP13:APN4_H	-0.374	-0.132	-0.193	-9.89	3.058	-0.758

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.