A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 11-May-2022 number of released structures: 12077
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NDB ID: UP0001  PDB ID: 1QPY 


Base Pair Morphology Parameters

CSV Format

Model NumberPair NumberPair NameShearStretchStaggerBucklePropellorOpening
13A_APN4:TP13_B-0.015-0.171-0.285-5.1678.904-3.259
16A_CP11:GPN6_B0.326-0.0440.0026.412-2.115-3.774
12A_CP15:GPN2_B0.131-0.359-0.2744.433.71-3.535
15A_GPN2:CP15_B-0.059-0.184-0.198-4.0184.054-3.561
11A_GPN6:CP11_B-0.344-0.268-0.122-5.22-3.175-4.135
14A_TP13:APN4_B0.142-0.121-0.3246.3269.226-3.308
19C_APN4:TP13_D0.093-0.159-0.1457.9572.951-1.437
112C_CP11:GPN6_D-0.313-0.3860.27-3.12.485-4.872
18C_CP15:GPN2_D-0.23-0.265-0.173-5.7043.687-6.125
111C_GPN2:CP15_D-0.076-0.313-0.294.4872.918-6.165
17C_GPN6:CP11_D-0.019-0.2960.3992.0763.337-4.881
110C_TP13:APN4_D-0.406-0.181-0.192-8.3342.146-1.322
115E_APN4:TP13_F0.117-0.119-0.313-5.1897.018-0.347
118E_CP11:GPN6_F0.1020.2780.2057.625-2.889-0.809
114E_CP15:GPN2_F0.279-0.395-0.324.6791.9-0.598
117E_GPN2:CP15_F-0.1280.02-0.087-1.9423.01-0.476
113E_GPN6:CP11_F-0.194-0.302-0.113-6.298-5.01-0.854
116E_TP13:APN4_F0.2240.029-0.2368.897.393-0.442
121G_APN4:TP13_H0.104-0.25-0.0235.0364.188-0.712
124G_CP11:GPN6_H-0.485-0.1180.093-5.0851.006-4.401
120G_CP15:GPN2_H-0.339-0.424-0.041-7.5925.632-5.71
123G_GPN2:CP15_H-0.09-0.155-0.4142.1753.075-5.502
119G_GPN6:CP11_H-0.281-0.4710.5831.374.982-4.576
122G_TP13:APN4_H-0.374-0.132-0.193-9.893.058-0.758

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.