1QRS: Base Pair Morphology Parameters

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As of 25-May-2022 number of released structures: 12098

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NDB ID: PTR009 PDB ID: 1QRS

Base Pair Morphology Parameters

CSV Format

Model Number	Pair Number	Pair Name	Shear	Stretch	Stagger	Buckle	Propellor	Opening
1	6	B_A7:U66_B	0.036	-0.366	-0.02	2.64	-5.963	-4.879
1	25	B_A13:A45_B	1.553	0.712	0.333	-7.549	12.88	-175.14
1	26	B_A14:U8_B	-4.113	-2.343	0.633	7.241	4.295	-91.241
1	14	B_A37:U33_B	-6.571	-4.871	-0.315	-13.609	8.092	-34.607
1	9	B_A51:U63_B	0.204	-0.472	0.159	-4.155	-6.229	-2.762
1	23	B_C11:G24_B	0.325	-0.147	0.184	-3.511	-6.504	2.763
1	24	B_C12:G23_B	0.459	-0.177	0.027	2.234	-6.523	-2.085
1	17	B_C40:G30_B	0.672	-0.203	-0.872	15.283	0.469	7.179
1	18	B_C41:G29_B	1.139	-0.506	-0.132	0.225	-12.008	7.695
1	21	B_C44:A26_B	3.572	-0.466	-0.114	-5.53	-12.156	-5.817
1	7	B_C49:G65_B	0.471	-0.46	0.054	7.962	-11.45	-2.019
1	1	B_G2:C71_B	-0.411	-0.239	-0.141	-13.164	-2.479	-4.177
1	2	B_G3:C70_B	-0.362	-0.373	-0.099	-5.827	-7.433	0.87
1	3	B_G4:C69_B	-0.345	-0.177	-0.051	-7.236	-17.748	0.093
1	4	B_G5:C68_B	-0.428	-0.279	-0.055	-15.649	-19.008	-1.44
1	22	B_G10:C25_B	-0.675	-0.48	-0.133	-3.218	-2.889	-0.284
1	27	B_G15:C48_B	0.282	4.03	-0.173	8.276	17.539	161.563
1	28	B_G19:C56_B	0.056	-0.419	-0.386	14.765	-15.828	0.138
1	19	B_G42:C28_B	0.216	-0.332	-0.784	-12.138	-3.026	-0.549
1	20	B_G43:C27_B	-0.35	-0.34	-0.193	-8.411	-11.11	-1.123
1	8	B_G50:C64_B	-0.555	-0.19	0.109	-1.943	-8.377	9.364
1	10	B_G52:C62_B	-0.301	-0.266	0.042	-1.735	-9.28	0.535
1	11	B_G53:C61_B	-0.392	-0.135	-0.196	-17.021	-8.258	4.331
1	5	B_U6:A67_B	0.029	-0.174	0.317	-13.934	-8.645	3.218
1	15	B_U38:U32_B	-3.116	-0.995	-1.242	6.432	-9.26	-24.476
1	16	B_U39:A31_B	-0.532	0.176	-0.031	8.76	11.453	1.113
1	12	B_U54:A58_B	4.383	-2.698	0.052	-5.825	14.47	-86.389
1	13	B_U55:G18_B	0.511	-5.495	0.498	22.643	2.724	-89.227

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.