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As of 25-May-2022 number of released structures: 12098
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NDB ID: PTR009  PDB ID: 1QRS 


Base Pair Morphology Parameters

CSV Format

Model NumberPair NumberPair NameShearStretchStaggerBucklePropellorOpening
16B_A7:U66_B0.036-0.366-0.022.64-5.963-4.879
125B_A13:A45_B1.5530.7120.333-7.54912.88-175.14
126B_A14:U8_B-4.113-2.3430.6337.2414.295-91.241
114B_A37:U33_B-6.571-4.871-0.315-13.6098.092-34.607
19B_A51:U63_B0.204-0.4720.159-4.155-6.229-2.762
123B_C11:G24_B0.325-0.1470.184-3.511-6.5042.763
124B_C12:G23_B0.459-0.1770.0272.234-6.523-2.085
117B_C40:G30_B0.672-0.203-0.87215.2830.4697.179
118B_C41:G29_B1.139-0.506-0.1320.225-12.0087.695
121B_C44:A26_B3.572-0.466-0.114-5.53-12.156-5.817
17B_C49:G65_B0.471-0.460.0547.962-11.45-2.019
11B_G2:C71_B-0.411-0.239-0.141-13.164-2.479-4.177
12B_G3:C70_B-0.362-0.373-0.099-5.827-7.4330.87
13B_G4:C69_B-0.345-0.177-0.051-7.236-17.7480.093
14B_G5:C68_B-0.428-0.279-0.055-15.649-19.008-1.44
122B_G10:C25_B-0.675-0.48-0.133-3.218-2.889-0.284
127B_G15:C48_B0.2824.03-0.1738.27617.539161.563
128B_G19:C56_B0.056-0.419-0.38614.765-15.8280.138
119B_G42:C28_B0.216-0.332-0.784-12.138-3.026-0.549
120B_G43:C27_B-0.35-0.34-0.193-8.411-11.11-1.123
18B_G50:C64_B-0.555-0.190.109-1.943-8.3779.364
110B_G52:C62_B-0.301-0.2660.042-1.735-9.280.535
111B_G53:C61_B-0.392-0.135-0.196-17.021-8.2584.331
15B_U6:A67_B0.029-0.1740.317-13.934-8.6453.218
115B_U38:U32_B-3.116-0.995-1.2426.432-9.26-24.476
116B_U39:A31_B-0.5320.176-0.0318.7611.4531.113
112B_U54:A58_B4.383-2.6980.052-5.82514.47-86.389
113B_U55:G18_B0.511-5.4950.49822.6432.724-89.227

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.