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As of 18-May-2022 number of released structures: 12082
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NDB ID: PTR010  PDB ID: 1QRT 


Base Pair Morphology Parameters

CSV Format

Model NumberPair NumberPair NameShearStretchStaggerBucklePropellorOpening
16B_A7:U66_B0.065-0.2560.1074.848-2.584-5.929
124B_A13:A45_B1.5590.5260.64-4.02212.442-176.423
125B_A14:U8_B-4.008-2.5321.0622.6927.239-88.968
19B_A51:U63_B0.45-0.419-0.1120.862-13.109-3.67
122B_C11:G24_B0.272-0.2380.088-6.147-4.5480.372
123B_C12:G23_B0.077-0.306-0.0554.812-8.467-3.551
116B_C40:G30_B1.153-0.121-0.77610.9683.37712.951
117B_C41:G29_B1.304-0.5050.068-5.163-8.4077.791
120B_C44:A26_B3.462-0.288-0.32-2.309-11.35-3.124
17B_C49:G65_B0.26-0.392-0.19.976-5.979-3.29
11B_G2:C71_B-0.355-0.240.025-13.204-0.995-4.354
12B_G3:C70_B-0.751-0.4420.251-1.731-9.7221.864
13B_G4:C69_B-0.286-0.1410.051-4.224-14.2651.223
14B_G5:C68_B-0.468-0.229-0.19-13.817-16.851-1.286
121B_G10:C25_B-0.184-0.313-0.035-4.95-6.1381.226
126B_G15:C48_B0.2294.002-0.0148.82119.142162.171
127B_G19:C56_B-0.027-0.519-0.548.555-12.9911.561
118B_G42:C28_B0.038-0.157-0.554-13.491-9.36.059
119B_G43:C27_B-0.828-0.417-0.502-14.171-12.74.094
18B_G50:C64_B-1.013-0.4590.0960.466-10.6594.619
110B_G52:C62_B-0.542-0.2320.436-3.653-14.7923.169
111B_G53:C61_B-0.488-0.3770.102-15.832-9.2063.449
15B_U6:A67_B-0.145-0.2070.22-12.937-12.8235.257
114B_U38:U32_B-3.136-1.172-0.81612.2870.5-23.605
115B_U39:A31_B0.1140.457-0.54722.92210.7411.595
112B_U54:A58_B4.223-2.1950.671-8.42914.045-88.984
113B_U55:G18_B0.123-5.9110.7419.9191.226-96.401

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.