1QRT: Base Pair Morphology Step Parameters

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NDB ID: PTR010 PDB ID: 1QRT

Base Pair Morphology Step Parameters

CSV Format

Model Number	Step Number	Step Name	Shift	Slide	Rise	Tilt	Roll	Twist	X-Displacement	Y-Displacement	Helical Rise	Inclination	Tip	Helical Twist
1	6	BB_A7C49:G65U66_BB	-0.547	-1.918	3.237	2.102	-4.525	41.257	-2.216	0.998	3.389	-6.393	-2.97	41.545
1	23	BB_A13A14:U8A45_BB	-0.671	2.757	3.295	-8.38	-3.149	-40.949	-3.522	-1.831	3.295	4.437	-11.808	-41.875
1	24	BB_A14G15:C48U8_BB	1.416	-3.05	3.172	2.046	18.037	-73.973	1.906	1.217	3.693	-14.776	1.676	-75.858
1	9	BB_A51G52:C62U63_BB	0.918	-1.659	3.382	-2.315	3.328	23.365	-5.123	-2.99	3.016	8.14	5.662	23.709
1	21	BB_C11C12:G23G24_BB	0.197	-2.322	2.947	5.113	4.062	25.031	-6.151	0.77	2.534	9.175	-11.548	25.856
1	22	BB_C12A13:A45G23_BB	1.564	-4.428	3.196	13.016	2.176	142.191	-2.349	-0.76	3.226	1.15	-6.875	142.451
1	15	BB_C40C41:G29G30_BB	-0.547	-1.696	3.468	-3.606	9.871	37.174	-3.792	0.38	2.976	15.117	5.523	38.581
1	16	BB_C41G42:C28G29_BB	-0.465	-1.48	3.211	3.397	12.315	18.886	-7.469	2.204	1.807	33.071	-9.123	22.768
1	19	BB_C44G10:C25A26_BB	-4.222	-0.646	3.516	2.159	7.773	52.64	-1.235	4.856	3.234	8.708	-2.419	53.211
1	7	BB_C49G50:C64G65_BB	0.071	-2.362	3.56	-0.006	8.643	23.422	-7.955	-0.167	2.539	20.42	0.015	24.945
1	1	BB_G2G3:C70C71_BB	0.791	-1.59	2.999	-0.738	8.365	28.292	-4.633	-1.687	2.418	16.656	1.47	29.487
1	2	BB_G3G4:C69C70_BB	0.164	-1.54	3.319	2.537	4.652	36.157	-3.091	0.085	3.108	7.446	-4.06	36.531
1	3	BB_G4G5:C68C69_BB	0.536	-1.949	3.495	5.083	10.379	28.711	-5.636	-0.037	2.698	19.94	-9.765	30.904
1	4	BB_G5U6:A67C68_BB	0.341	-1.259	3.451	0.539	3.826	32.825	-2.882	-0.506	3.292	6.742	-0.949	33.046
1	20	BB_G10C11:G24C25_BB	-0.372	-1.719	3.29	-1.225	3.927	38.581	-3.059	0.413	3.117	5.923	1.848	38.791
1	17	BB_G42G43:C27C28_BB	-0.393	-1.975	3.623	-0.449	5.168	27.437	-5.392	0.701	3.21	10.773	0.935	27.913
1	18	BB_G43C44:A26C27_BB	0.22	-1.002	3.038	2.096	6.587	43.288	-1.912	-0.114	2.871	8.862	-2.82	43.81
1	8	BB_G50A51:U63C64_BB	-0.54	-0.889	3.217	1.285	7.996	39.731	-2.137	0.916	2.972	11.618	-1.867	40.515
1	10	BB_G52G53:C61C62_BB	0.598	-2.427	3.483	4.627	6.259	34.298	-4.966	-0.291	3.059	10.446	-7.724	35.144
1	11	BB_G53U54:A58C61_BB	-2.1	-1.776	3.164	1.683	-0.388	86.927	-1.282	1.561	3.137	-0.282	-1.223	86.941
1	5	BB_U6A7:U66A67_BB	0.031	-1.315	2.819	1.607	8.109	30.687	-3.613	0.183	2.4	14.984	-2.97	31.755
1	13	BB_U38U39:A31U32_BB	1.053	-2.007	3.14	-10.241	5.791	44.743	-2.999	-2.121	2.587	7.455	13.185	46.187
1	14	BB_U39C40:G30A31_BB	0.377	-2.114	3.438	0.478	10.046	36.332	-4.539	-0.524	2.782	15.744	-0.748	37.653
1	12	BB_U54U55:G18A58_BB	1.234	-1.849	3.066	7.796	4.379	47.266	-2.595	-0.937	3.048	5.405	-9.623	48.057

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.