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As of 11-Dec-2019 number of released structures: 10507
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NDB ID: PR0014  PDB ID: 1QU2 


Base Pair Morphology Parameters

CSV Format

Model NumberPair NumberPair NameShearStretchStaggerBucklePropellorOpening
127T_A14:U8_T-4.245-1.9660.4847.10510.086-91.962
116T_A38:C32_T-4.363-0.828-0.3758.6576.291-11.338
122T_A44:G26_T0.3261.377-0.16-26.013-24.049-20.287
14T_C4:G69_T0.2120.025-0.5113.554-7.8375.51
124T_C11:G24_T0.132-0.0890.272-13.735-7.069-0.416
126T_C13:G22_T0.544-0.103-0.0485.027-5.3691.461
11T_G1:C72_T-0.081-0.051-0.2-5.781-10.1730.571
12T_G2:C71_T-0.42-0.0690.4240.583-6.4074.724
13T_G3:C70_T-0.362-0.0910.0051.945-7.3661.089
17T_G7:C66_T-0.404-0.40.1610.106-7.304-5.648
123T_G10:C25_T-0.346-0.227-0.041-12.156-12.555-1.815
128T_G15:C48_T0.3363.7590.0193.398-1.973155.023
129T_G19:C56_T0.042-0.3080.022-18.786-9.911-0.85
117T_G39:C31_T-0.254-0.167-0.307-5.98-3.83-0.126
118T_G40:C30_T-0.8460.039-0.249-12.455-8.892.155
119T_G41:C29_T-0.747-0.024-0.137-9.835-13.7092.49
121T_G43:C27_T0.017-0.0270.236-16.88-21.2661.525
18T_G49:U65_T-2.565-0.527-0.094-1.809-10.144.388
19T_G50:C64_T-1.3640.1460.158-9.039-10.067.549
111T_G52:C62_T-0.166-0.2140.039-0.295-9.2810.158
112T_G53:C61_T-0.41-0.2380.016-5.069-6.4640.219
15T_U5:G68_T2.268-0.48-0.0291.36-14.7022.767
16T_U6:A67_T0.2130.0010.161-5.289-8.7793.229
125T_U12:A23_T-0.1420.0130.128-2.274-3.071-2.605
115T_U36:U33_T0.9074.75-0.314-18.8252.03194.646
120T_U42:A28_T0.017-0.2180.174-7.192-16.719-0.193
110T_U51:A63_T-0.622-0.2330.273-3.714-6.093-0.151
113T_U54:A58_T3.539-1.4630.732-1.9819.98-89.669
114T_U55:G18_T0.769-5.5970.20117.89221.118-99.413

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.