A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 14-Oct-2020 number of released structures: 11024
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NDB ID: PR0104  PDB ID: 1QZW 


Base Pair Morphology Parameters

CSV Format

Model NumberPair NumberPair NameShearStretchStaggerBucklePropellorOpening
11B_C181:G223_B0.176-0.494-0.981-32.74119.583-13.51
12B_C182:G222_B-0.119-0.105-0.104-30.08824.894-11.491
110B_C199:G208_B0.1880.108-0.363.659-13.2496.274
111B_C200:G207_B0.186-0.020.157-4.689-2.642-6.004
112B_C201:G206_B-0.151-0.044-0.7094.00713.52-6.804
16B_C214:G193_B0.029-0.0120.0763.709-3.623-1.441
17B_C215:G192_B0.1280.0050.616-15.4659.7053.53
13B_G183:C221_B0.069-0.4041.2440.07-21.352-11.932
14B_G184:C220_B0.224-0.1971.65530.5858.678-3.168
15B_G185:C219_B-0.061-0.428-1.612-10.335-21.920.12
18B_G187:U217_B0.647-0.058-0.71652.92515.468168.921
19B_G197:G210_B-7.03-2.4130.164-4.23315.202-28.802
113B_G202:A205_B6.118-5.3191.785-1.272-8.213-20.275
114D_C181:G223_D0.176-0.494-0.981-32.73619.581-13.509
115D_C182:G222_D-0.119-0.104-0.104-30.0924.892-11.486
123D_C199:G208_D0.1880.108-0.3613.65-13.2486.277
124D_C200:G207_D0.186-0.020.157-4.687-2.648-6.002
125D_C201:G206_D-0.152-0.044-0.7094.00713.52-6.807
119D_C214:G193_D0.029-0.0120.0773.713-3.621-1.444
120D_C215:G192_D0.1290.0050.616-15.4569.7133.528
116D_G183:C221_D0.069-0.4041.2440.073-21.35-11.932
117D_G184:C220_D0.224-0.1971.65530.5888.66-3.168
118D_G185:C219_D-0.061-0.428-1.612-10.35-21.89420.117
121D_G187:U217_D0.647-0.058-0.71652.93115.469168.91
122D_G197:G210_D-7.03-2.4130.163-4.23215.195-28.813
126D_G202:A205_D6.118-5.3191.785-1.27-8.208-20.275
127F_C181:G223_F0.176-0.494-0.981-32.74819.559-13.503
128F_C182:G222_F-0.119-0.105-0.105-30.07824.901-11.493
136F_C199:G208_F0.1870.108-0.363.641-13.2446.265
137F_C200:G207_F0.185-0.0190.157-4.704-2.641-6.012
138F_C201:G206_F-0.152-0.044-0.7083.99513.517-6.81
132F_C214:G193_F0.03-0.0120.0763.706-3.607-1.439
133F_C215:G192_F0.1280.0050.616-15.4729.7223.523
129F_G183:C221_F0.069-0.4041.2440.069-21.345-11.947
130F_G184:C220_F0.224-0.1971.65430.5788.692-3.161
131F_G185:C219_F-0.06-0.428-1.612-10.355-21.91320.11
134F_G187:U217_F0.647-0.059-0.71652.91715.462168.934
135F_G197:G210_F-7.03-2.4130.165-4.2515.211-28.807
139F_G202:A205_F6.118-5.3191.785-1.273-8.225-20.281
140H_C181:G223_H0.177-0.493-0.98-32.75419.592-13.499
141H_C182:G222_H-0.118-0.104-0.104-30.10124.881-11.486
149H_C199:G208_H0.1880.108-0.363.656-13.2566.27
150H_C200:G207_H0.186-0.0190.157-4.682-2.637-6.01
151H_C201:G206_H-0.151-0.044-0.7083.99313.508-6.794
145H_C214:G193_H0.03-0.0120.0773.706-3.624-1.438
146H_C215:G192_H0.1280.0050.616-15.4729.7013.533
142H_G183:C221_H0.069-0.4031.2440.078-21.343-11.927
143H_G184:C220_H0.224-0.1971.65430.5798.69-3.169
144H_G185:C219_H-0.061-0.428-1.612-10.342-21.9120.125
147H_G187:U217_H0.647-0.058-0.71552.91515.473168.924
148H_G197:G210_H-7.03-2.4130.164-4.22915.209-28.807
152H_G202:A205_H6.117-5.3191.786-1.264-8.194-20.279

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.