A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 14-Oct-2020 number of released structures: 11024
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NDB ID: PR0104  PDB ID: 1QZW 


Base Pair Morphology Step Parameters

CSV Format

Model NumberStep NumberStep NameShiftSlideRiseTiltRollTwistX-DisplacementY-DisplacementHelical RiseInclinationTipHelical Twist
11BB_C181C182:G222G223_BB-2.203-1.233.827-5.4462.45525.884-3.4693.0424.0645.38911.95626.553
12BB_C182G183:C221G222_BB0.501-2.2412.418-5.6325.52329.496-4.989-1.6971.85310.61110.8230.51
18BB_C199C200:G207G208_BB-0.135-1.8573.381-3.0925.14236.141-3.66-0.2083.0978.2194.94236.619
19BB_C200C201:G206G207_BB-1.139-1.7952.8442.64411.93532.334-4.4382.2341.9820.538-4.5534.51
110BB_C201G202:A205G206_BB-3.048-0.1993.146-3.86729.03353.402-1.6122.8422.90329.9173.98560.385
15BB_C214C215:G192G193_BB2.203-2.7153.4165.6236.56439.395-4.702-2.5463.2139.597-8.22240.295
16BB_C215G187:U217G192_BB4.1864.458-3.08758.611-156.318-133.18-2.71.919-1.76778.65829.493-174.822
13BB_G183G184:C220C221_BB-0.726-1.3052.577-12.6513.539.907-2.118-0.0492.5644.96817.95741.927
14BB_G184G185:C219C220_BB1.483-0.5354.5822.26227.94222.768-5.1541.4532.93645.764-36.46242.164
17BB_G197C199:G208G210_BB1.436-2.3126.063-6.69513.50387.057-2.18-1.295.6369.7414.8388.094
111DD_C181C182:G222G223_DD-2.202-1.233.827-5.4522.46625.889-3.4713.0394.0645.41211.96626.56
112DD_C182G183:C221G222_DD0.501-2.2412.418-5.6365.51529.493-4.988-1.6971.85310.59710.82830.506
118DD_C199C200:G207G208_DD-0.135-1.8573.381-3.0935.1536.139-3.661-0.2083.0978.2324.94436.618
119DD_C200C201:G206G207_DD-1.14-1.7962.8442.63911.93832.331-4.4392.2341.9820.545-4.54134.508
120DD_C201G202:A205G206_DD-3.048-0.1993.146-3.86429.03353.401-1.6122.8432.90329.9163.98260.384
115DD_C214C215:G192G193_DD2.203-2.7153.4165.636.5739.399-4.702-2.5453.2139.605-8.23140.301
116DD_C215G187:U217G192_DD4.1864.46-3.08558.616-156.328-133.238-2.71.92-1.76678.66229.495-174.833
113DD_G183G184:C220C221_DD-0.726-1.3052.577-12.653.50339.907-2.118-0.0492.5644.97117.95441.927
114DD_G184G185:C219C220_DD1.483-0.5354.5822.26427.9422.772-5.1541.4532.93745.759-36.46242.166
117DD_G197C199:G208G210_DD1.436-2.3116.064-6.69413.50187.057-2.18-1.295.6369.744.82988.093
121FF_C181C182:G222G223_FF-2.203-1.233.827-5.4412.47525.884-3.4753.0444.0635.43311.94526.554
122FF_C182G183:C221G222_FF0.501-2.2412.419-5.645.50829.496-4.988-1.6971.85410.58310.83530.508
128FF_C199C200:G207G208_FF-0.135-1.8573.381-3.0935.1536.143-3.661-0.2083.0978.234.94336.622
129FF_C200C201:G206G207_FF-1.139-1.7952.8442.63211.92832.334-4.4382.2321.98120.528-4.52934.507
130FF_C201G202:A205G206_FF-3.048-0.23.146-3.86629.02453.402-1.6132.8432.90229.9093.98460.381
125FF_C214C215:G192G193_FF2.202-2.7153.4175.6256.55739.389-4.702-2.5453.2149.589-8.22640.289
126FF_C215G187:U217G192_FF4.1874.454-3.08958.618-156.32-133.048-2.71.919-1.76778.66229.497-174.811
123FF_G183G184:C220C221_FF-0.726-1.3052.577-12.6433.51239.906-2.119-0.0492.5644.98517.94641.924
124FF_G184G185:C219C220_FF1.482-0.5354.5822.26227.95222.774-5.1531.4532.93545.771-36.45342.174
127FF_G197C199:G208G210_FF1.436-2.3126.063-6.69213.51287.056-2.181-1.295.6359.7484.82888.093
131HH_C181C182:G222G223_HH-2.203-1.233.827-5.4362.44525.884-3.4673.0474.0645.36711.93426.55
132HH_C182G183:C221G222_HH0.501-2.2412.418-5.6365.53329.493-4.99-1.6971.85110.6310.82730.509
138HH_C199C200:G207G208_HH-0.135-1.8583.38-3.0915.1536.142-3.661-0.2083.0968.234.9436.621
139HH_C200C201:G206G207_HH-1.139-1.7952.8452.64111.92832.334-4.4382.2331.98220.527-4.54434.507
140HH_C201G202:A205G206_HH-3.049-0.23.145-3.86229.03953.403-1.6122.8432.90229.9223.97960.388
135HH_C214C215:G192G193_HH2.203-2.7153.4165.6296.55939.386-4.703-2.5463.2149.592-8.23240.287
136HH_C215G187:U217G192_HH4.1854.457-3.08858.618-156.315-133.147-2.71.919-1.76778.65729.496-174.819
133HH_G183G184:C220C221_HH-0.727-1.3052.577-12.6513.49239.901-2.117-0.0492.5644.95717.95941.92
134HH_G184G185:C219C220_HH1.483-0.5354.5822.26827.94822.771-5.1531.4532.93645.766-36.46542.172
137HH_G197C199:G208G210_HH1.437-2.3116.064-6.69613.587.059-2.18-1.295.6369.7394.8388.096

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.