1R2P: Base Pair Morphology Parameters

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As of 11-May-2022 number of released structures: 12077

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NDB ID: 1R2P PDB ID: 1R2P

Base Pair Morphology Parameters

CSV Format

Model Number	Pair Number	Pair Name	Shear	Stretch	Stagger	Buckle	Propellor	Opening
1	2	A_A2:U33_A	0.173	-0.385	-0.64	-5.284	17.697	-7.183
1	8	A_A8:U27_A	1.182	-0.706	-1.807	-27.141	24.141	-55.066
1	12	A_A13:U20_A	-0.677	-0.285	0.369	-1.024	-7.907	-12.455
1	4	A_C4:G31_A	0.254	-0.257	-0.311	0.992	-6.585	-0.99
1	5	A_C5:G30_A	0.019	-0.777	-1.404	5.933	9.445	-9.628
1	10	A_C11:G22_A	0.179	-0.229	-0.107	-17.492	18.399	-2.477
1	1	A_G1:C34_A	-0.203	-0.205	-0.148	-1.457	-1.721	-0.758
1	3	A_G3:U32_A	-1.501	-0.535	-0.904	-1.885	17.51	-14.404
1	6	A_G6:C29_A	-0.17	-0.519	-0.953	1.327	10.103	-4.248
1	9	A_G10:C23_A	-0.177	-0.516	-0.962	-23.089	32.036	-8.679
1	11	A_G12:C21_A	0.474	-0.057	0.368	7.717	-7.494	2.417
1	14	A_G15:A18_A	6.213	-3.742	1.54	-6.792	-7.604	-9.088
1	7	A_U7:A28_A	-0.062	-0.581	-1.181	11.045	-1.528	6.721
1	13	A_U14:G19_A	2.643	-0.401	-0.184	13.254	3.322	-4.932

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.