1R2P: Base Pair Morphology Step Parameters

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NDB ID: 1R2P PDB ID: 1R2P

Base Pair Morphology Step Parameters

CSV Format

Model Number	Step Number	Step Name	Shift	Slide	Rise	Tilt	Roll	Twist	X-Displacement	Y-Displacement	Helical Rise	Inclination	Tip	Helical Twist
1	2	AA_A2G3:U32U33_AA	-0.6	-1.159	4.332	1.113	-6.109	25.522	-0.308	1.729	4.454	-13.574	-2.473	26.254
1	11	AA_A13U14:G19U20_AA	0.249	-1.447	2.872	1.325	-0.333	41.973	-1.988	-0.227	2.889	-0.464	-1.85	41.994
1	4	AA_C4C5:G30G31_AA	-0.696	-0.672	3.931	1.733	-4.121	32.722	-0.338	1.579	3.943	-7.272	-3.058	33.018
1	5	AA_C5G6:C29G30_AA	0.368	-1.018	4.676	-3.801	-16.114	31.183	1.929	-1.461	4.571	-27.668	6.526	35.209
1	9	AA_C11G12:C21G22_AA	-0.124	-1.002	2.885	1.584	3.644	24.976	-3.199	0.678	2.7	8.358	-3.633	25.285
1	1	AA_G1A2:U33C34_AA	-0.442	-1.52	3.716	-0.843	13.745	33.627	-4.472	0.586	2.904	22.617	1.387	36.262
1	3	AA_G3C4:G31U32_AA	0.652	-1.279	3.745	-0.936	-2.619	33.143	-1.729	-1.321	3.812	-4.581	1.638	33.256
1	6	AA_G6U7:A28C29_AA	1.044	-1.121	3.476	1.685	-0.463	35.109	-1.782	-1.459	3.535	-0.768	-2.791	35.151
1	8	AA_G10C11:G22C23_AA	0.395	-1.71	3.9	-1.504	15.327	25.61	-6.688	-1.099	2.476	31.236	3.065	29.818
1	10	AA_G12A13:U20C21_AA	-0.578	-1.652	4.011	-3.295	5.835	27.124	-5.069	0.268	3.626	12.206	6.893	27.925
1	7	AA_U7A8:U27A28_AA	-3.498	-2.305	5.619	7.268	-10.484	37.426	-1.288	6.654	5.309	-15.787	-10.945	39.467
1	12	AA_U14G15:A18G19_AA	0.198	-0.866	3.959	12.053	32.58	54.228	-2.503	0.435	3.046	32.321	-11.957	63.682

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.