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A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 18-May-2022 number of released structures: 12082
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NDB ID:
1R3X
PDB ID:
1R3X
Base Pair Morphology Parameters
CSV Format
Model Number
Pair Number
Pair Name
Shear
Stretch
Stagger
Buckle
Propellor
Opening
1
1
A_DA1:DT16_B
-0.072
-0.026
0.018
-0.967
-6.042
-9.498
1
3
A_DA3:DT14_B
0.875
-0.252
0.127
-1.284
-17.357
-12.099
1
5
A_DA5:DT12_B
0.628
-0.428
0.662
-1.487
11.399
6.546
1
7
A_DA7:DT10_B
-0.438
-0.195
0.177
1.721
-0.532
11.131
1
8
A_DA8:DT9_B
-0.783
-0.68
0.786
3.09
-5.217
5.898
1
2
A_DG2:DC15_B
0.601
-0.326
-0.255
12.098
1.087
-12.144
1
4
A_DG4:DC13_B
0.217
-0.046
-0.56
-11.676
-14.216
-3.067
1
6
A_DG6:DC11_B
-1.013
-0.581
0.235
1.413
-6.53
-8.058
The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures',
Nucleic Acids Res
.
31(17)
, 5108-21. Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures',
Nat Protoc
.
3(7)
, 1213-27.
