1R3X: Base Pair Morphology Step Parameters

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NDB ID: 1R3X PDB ID: 1R3X

Base Pair Morphology Step Parameters

CSV Format

Model Number	Step Number	Step Name	Shift	Slide	Rise	Tilt	Roll	Twist	X-Displacement	Y-Displacement	Helical Rise	Inclination	Tip	Helical Twist
1	1	AA_DA1DG2:DC15DT16_BB	-0.019	-0.716	2.851	2.404	11.602	27.884	-3.324	0.441	2.362	22.817	-4.728	30.251
1	3	AA_DA3DG4:DC13DT14_BB	-0.133	-1.167	3.243	7.226	-1.271	33.19	-1.795	1.377	3.185	-2.193	-12.461	33.969
1	5	AA_DA5DG6:DC11DT12_BB	-0.309	-2.074	3.644	4.616	0.86	25.341	-4.915	2.109	3.462	1.939	-10.408	25.765
1	7	AA_DA7DA8:DT9DT10_BB	-0.605	-1.987	3.106	-3.522	-1.058	25.63	-4.149	0.399	3.236	-2.368	7.887	25.889
1	2	AA_DG2DA3:DT14DC15_BB	1.123	-1.507	2.978	-3.224	-6.345	41.545	-1.486	-1.872	3.073	-8.866	4.506	42.124
1	4	AA_DG4DA5:DT12DC13_BB	0.376	-1.509	2.299	-11.959	-5.769	29.782	-1.961	-2.187	2.235	-10.587	21.947	32.546
1	6	AA_DG6DA7:DT10DC11_BB	0.691	-1.865	2.768	1.073	-7.678	25.42	-2.17	-1.241	3.21	-16.952	-2.37	26.557

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.