A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 8-Jul-2020 number of released structures: 10846
Search for released structures

NDB ID: PD0478  PDB ID: 1R4I 


Base Pair Morphology Parameters

CSV Format

Model NumberPair NumberPair NameShearStretchStaggerBucklePropellorOpening
13C_DA3:DT34_D0.2020.0040.43717.627-2.461-3.497
15C_DA5:DT32_D0.018-0.125-0.2756.182-13.8222.971
16C_DA6:DT31_D0.124-0.0930.0191.882-2.999-1.661
18C_DA8:DT29_D-0.125-0.065-0.216-9.8411.7417.032
111C_DA11:DT26_D0.0660.006-0.08610.470.9713.168
112C_DA12:DT25_D0.032-0.0090.2546.515-5.411-1.642
114C_DA14:DT23_D0.085-0.0560.0616.414-6.927-1.222
115C_DA15:DT22_D0.0640.0470.0963.524-8.713-2.611
117C_DA17:DT20_D0.0920.044-0.182-9.499-5.528-5.611
11C_DC1:DG36_D-0.063-0.123-0.235-7.0546.879-2.905
12C_DC2:DG35_D0.0860.054-0.2037.9935.642-3.045
17C_DC7:DG30_D0.212-0.0110.0085.6092.6662.168
110C_DC10:DG27_D0.135-0.1030.218-2.553-8.6341.503
116C_DC16:DG21_D0.145-0.078-0.2736.093-0.6140.042
14C_DG4:DC33_D-0.216-0.002-0.04513.288-7.1311.034
113C_DG13:DC24_D0.0070.084-0.01411.928-5.305-1.602
118C_DG18:DC19_D-0.065-0.178-0.391-4.739-2.573-2.858
19C_DT9:DA28_D0.006-0.0630.768-17.489-1.6112.102

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.