A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 18-Sep-2019 number of released structures: 10387
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NDB ID: PD0480  PDB ID: 1R71 


Base Pair Morphology Parameters

CSV Format

Model NumberPair NumberPair NameShearStretchStaggerBucklePropellorOpening
12E_BRU2:DA16_F-0.4940.1020.49211.712-7.5181.622
11E_DA1:BRU17_F0.7770.4620.4656.865-7.53416.378
16E_DA6:DT12_F0.322-0.196-0.1-15.7460.3830.274
113E_DA13:DT5_F0.460.023-0.04514.226-23.7544.136
114E_DA14:DT4_F-1.173-0.539-0.098-1.734-23.398-0.956
115E_DA15:DT3_F-1.1160.118-0.263-17.165-25.1213.058
116E_DA16:BRU2_F-0.2110.002-0.158-9.043-12.9883.165
18E_DC8:DG10_F0.274-0.2490.291-1.543-3.914-6.269
111E_DC11:DG7_F0.079-0.365-0.24710.459-5.337-4.232
17E_DG7:DC11_F-0.039-0.6910.201-2.359-2.223-2.921
19E_DG9:DC9_F-0.3-0.10.206-0.136-6.9314.523
110E_DG10:DC8_F-0.194-0.2030.2834.693-8.994-12.612
117E_DG17:DC1_F-0.3350.0630.308-4.076-11.084-1.029
13E_DT3:DA15_F-0.172-0.1580.0657.207-14.6639.246
14E_DT4:DA14_F-0.475-0.1260.144-7.875-14.6193.048
15E_DT5:DA13_F-0.136-0.172-0.136-16.056-16.735-0.602
112E_DT12:DA6_F0.888-0.595-0.40414.5460.94814.054
119G_BRU2:DA16_H-0.0020.0150.0878.827-17.3921.416
118G_DA1:BRU17_H0.4940.14-0.0411.589-7.983-3.127
123G_DA6:DT12_H0.854-0.384-0.339-7.418-1.1093.462
130G_DA13:DT5_H0.0440.1020.02118.093-17.6860.76
131G_DA14:DT4_H0.544-0.3030.1538.167-14.6522.953
132G_DA15:DT3_H0.198-0.199-0.117-0.237-18.0022.556
133G_DA16:BRU2_H0.0340.191-0.034-4.667-12.5983.191
125G_DC8:DG10_H1.09-0.0320.121.742-3.899-0.224
128G_DC11:DG7_H0.1410.05-0.0021.8070.136-3.712
124G_DG7:DC11_H0.404-0.356-0.0336.283-1.956-11.444
126G_DG9:DC9_H0.69-0.3770.13-1.136-9.632-5.314
127G_DG10:DC8_H-0.278-0.3490.082.006-6.818-7.932
134G_DG17:DC1_H-0.165-0.2420.176-6.029-10.401-3.633
120G_DT3:DA15_H-0.663-0.2050.0990.78-24.488-10.541
121G_DT4:DA14_H0.901-0.487-0.481-0.386-22.1870.26
122G_DT5:DA13_H0.428-0.1820.444-18.655-24.3162.681
129G_DT12:DA6_H0.039-0.049-0.113.045-2.3083.914

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.