A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 21-Aug-2019 number of released structures: 10343
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NDB ID: PR0107  PDB ID: 1RC7 


Base Pair Morphology Parameters

CSV Format

Model NumberPair NumberPair NameShearStretchStaggerBucklePropellorOpening
13C_C13:G8_B-0.18-0.2070.0241.823-10.6891.835
15C_C15:G6_B0.422-0.174-0.0660.003-10.2580.656
17C_C17:G4_B0.155-0.068-0.115.289-8.7840.394
19C_C19:G2_B0.551-0.3550.1064.496-15.2922.515
110C_C20:G1_B-0.07-0.20.1670.402-4.573-0.783
11C_G11:C10_B-0.348-0.1190.043-6.598-2.1990.521
12C_G12:C9_B-0.077-0.193-0.066-4.431-11.731-0.187
14C_G14:C7_B-0.23-0.423-0.004-3.37-11.5760.423
16C_G16:C5_B-0.14-0.211-0.0571.74-8.1441.009
18C_G18:C3_B0.060.0970.3847.615-12.0050.765
113E_C33:G28_D0.187-0.136-0.0361.02-14.070.75
115E_C35:G26_D0.063-0.097-0.2920.57-3.432.707
117E_C37:G24_D0.175-0.135-0.1163.62-3.822.819
119E_C39:G22_D0.5120.0220.0786.135-6.3165.179
120E_C40:G21_D0.274-0.169-0.1237.188-1.7490.298
111E_G31:C30_D-0.64-0.0430.5060.783-9.497.116
112E_G32:C29_D-0.587-0.2680.144-6.919-15.862-0.175
114E_G34:C27_D-0.428-0.213-0.255-3.056-9.1222.584
116E_G36:C25_D0.0240.0250.029-2.341-6.3264.345
118E_G38:C23_D-0.474-0.3340.0023.907-9.677-1.011

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.