A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 11-Dec-2019 number of released structures: 10507
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NDB ID: ARN035  PDB ID: 1RNA 


Base Pair Morphology Parameters

CSV Format

Model NumberPair NumberPair NameShearStretchStaggerBucklePropellorOpening
13A_A3:U26_B0.134-0.1110.149-3.378-17.65-3.062
15A_A5:U24_B-0.719-0.3430.349-1.517-16.4490.801
17A_A7:U22_B0.075-0.1080.1370.213-18.58-1.161
19A_A9:U20_B-0.489-0.210.1411.28-23.6941.358
111A_A11:U18_B-0.78-0.309-0.048-3.703-15.9850.298
113A_A13:U16_B-0.368-0.18-0.402-8.713-21.6874.344
114A_A14:U15_B0.264-0.1070.77710.566-15.067-5.718
11A_U1:A28_B-0.049-0.1220.012-4.896-28.802-0.602
12A_U2:A27_B0.388-0.1830.1267.5-15.9650.653
14A_U4:A25_B0.265-0.169-0.33310.739-20.0333.454
16A_U6:A23_B0.437-0.242-0.025-0.198-18.7522.017
18A_U8:A21_B-0.278-0.002-0.2895.123-18.947-3.059
110A_U10:A19_B0.047-0.156-0.0060.859-17.326-0.261
112A_U12:A17_B0.033-0.0940.073.776-20.801-4.071

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.