A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 22-Jun-2022 number of released structures: 12128
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NDB ID: PDR011  PDB ID: 1RPE 


Base Pair Hydrogen Bonding Classification

CSV Format

Model NumberPair NumberPair NameLeontis / Westhof ClassificationSaenger Classification
11B_DA2:DT40_A120
13B_DA4:DT38_A120
15B_DA6:DT36_A120
16B_DA7:DT35_A120
110B_DA11:DT31_A120
14B_DC5:DG37_A119
112B_DC13:DG29_A119
18B_DG9:DC33_A119
115B_DG16:DC26_A119
119B_DG20:DC22_A119
12B_DT3:DA39_A120
17B_DT8:DA34_A120
19B_DT10:DA32_A120
111B_DT12:DA30_A120
113B_DT14:DA28_A120
114B_DT15:DA27_A120
116B_DT17:DA25_A120
117B_DT18:DA24_A120
118B_DT19:DA23_A120

Leontis/Westhof Classification Legend

Base-Phosphate Interactions Legend

Base-Stacking Interactions Legend

Saenger Classification Legend

Correspondence of Leontis/Westhof names to Saenger numbering (table)