A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 22-Jun-2022 number of released structures: 12128
Search for released structures

NDB ID: PDR011  PDB ID: 1RPE 


Base Pair Morphology Parameters

CSV Format

Model NumberPair NumberPair NameShearStretchStaggerBucklePropellorOpening
11B_DA2:DT40_A0.281-0.0670.46611.911-6.917-3.967
13B_DA4:DT38_A0.595-0.040.3724.536-9.546.986
15B_DA6:DT36_A0.037-0.491-0.0293.155-6.6320.49
16B_DA7:DT35_A-0.696-0.168-0.105-5.814-8.58510.198
110B_DA11:DT31_A0.082-0.225-0.119-3.788-4.8-2.567
14B_DC5:DG37_A0.151-0.612-0.3632.627-18.218-9.427
112B_DC13:DG29_A-1.505-0.124-0.0640.919-16.3461.729
18B_DG9:DC33_A0.197-0.3780.089-2.913-15.073-5.744
115B_DG16:DC26_A0.136-0.358-0.557-5.344-7.706-1.243
119B_DG20:DC22_A0.981-0.4250.169-6.349-3.5431.468
12B_DT3:DA39_A-0.533-0.74-0.083-1.325-5.913-4.938
17B_DT8:DA34_A-0.776-0.683-0.065.795-19.918-2.541
19B_DT10:DA32_A-0.497-0.0780.2225.326-2.988-3.073
111B_DT12:DA30_A-0.331-0.24-0.84420.115-11.327-2.976
113B_DT14:DA28_A0.3-0.1220.025-3.751-10.8376.547
114B_DT15:DA27_A-0.22-0.246-0.66510.804-4.8770.821
116B_DT17:DA25_A-1.06-0.3560.0133.706-5.79-2.805
117B_DT18:DA24_A0.16-0.3260.353-4.409-12.935.701
118B_DT19:DA23_A-0.1530.102-0.1234.356-11.9083.0

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.