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A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 22-Jun-2022 number of released structures: 12128
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NDB ID:
PDR011
PDB ID:
1RPE
 
Base Pair Morphology Step Parameters
CSV Format
Model Number
Step Number
Step Name
Shift
Slide
Rise
Tilt
Roll
Twist
X-Displacement
Y-Displacement
Helical Rise
Inclination
Tip
Helical Twist
1
1
BB_DA2DT3:DA39DT40_AA
0.174
-0.627
3.753
6.821
-3.912
30.006
-0.294
1.208
3.75
-7.397
-12.897
30.996
1
3
BB_DA4DC5:DG37DT38_AA
-1.35
-0.855
3.244
3.508
5.031
32.328
-2.327
2.954
2.923
8.935
-6.231
32.889
1
5
BB_DA6DA7:DT35DT36_AA
0.265
0.147
3.521
0.839
5.873
30.234
-0.964
-0.321
3.492
11.124
-1.59
30.798
1
6
BB_DA7DT8:DA34DT35_AA
-0.558
0.044
3.09
-0.209
0.609
34.706
-0.014
0.906
3.094
1.022
0.35
34.712
1
10
BB_DA11DT12:DA30DT31_AA
0.614
-0.324
2.615
3.571
-2.162
30.471
-0.267
-0.588
2.684
-4.089
-6.754
30.749
1
4
BB_DC5DA6:DT36DG37_AA
0.176
-0.351
3.48
-2.956
6.016
30.685
-1.838
-0.909
3.322
11.201
5.504
31.392
1
12
BB_DC13DT14:DA28DG29_AA
0.143
0.363
3.516
-1.088
1.853
44.934
0.295
-0.293
3.523
2.422
1.422
44.983
1
8
BB_DG9DT10:DA32DC33_AA
-0.087
-0.761
3.163
-1.757
-8.988
28.484
0.397
-0.197
3.246
-17.697
3.459
29.891
1
15
BB_DG16DT17:DA25DC26_AA
1.064
-0.852
3.046
-1.065
-1.766
26.394
-1.423
-2.586
3.051
-3.859
2.328
26.473
1
2
BB_DT3DA4:DT38DA39_AA
0.824
-0.313
3.143
-1.495
-6.428
39.623
0.25
-1.365
3.122
-9.403
2.187
40.147
1
7
BB_DT8DG9:DC33DA34_AA
-0.036
-0.235
3.492
-3.913
1.853
44.624
-0.487
-0.332
3.471
2.433
5.139
44.823
1
9
BB_DT10DA11:DT31DA32_AA
0.112
0.303
3.488
7.307
-3.956
45.747
0.74
0.516
3.43
-5.04
-9.308
46.455
1
11
BB_DT12DC13:DG29DA30_AA
0.639
-0.95
3.716
-1.9
7.855
32.293
-3.101
-1.464
3.357
13.854
3.351
33.262
1
13
BB_DT14DT15:DA27DA28_AA
0.325
0.708
2.878
4.599
3.664
32.745
0.686
0.122
2.955
6.435
-8.076
33.254
1
14
BB_DT15DG16:DC26DA27_AA
-0.124
-0.192
3.954
-0.049
6.745
32.405
-1.708
0.208
3.838
11.926
0.086
33.081
1
16
BB_DT17DT18:DA24DA25_AA
0.77
-1.079
3.723
1.023
-1.584
40.703
-1.349
-0.977
3.778
-2.276
-1.469
40.745
1
17
BB_DT18DT19:DA23DA24_AA
-0.026
0.18
2.841
1.155
3.598
34.29
-0.183
0.2
2.843
6.079
-1.952
34.491
1
18
BB_DT19DG20:DC22DA23_AA
-0.374
-0.241
3.715
-8.714
5.454
44.594
-0.855
-0.389
3.67
7.076
11.305
45.705
The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures',
Nucleic Acids Res
.
31(17)
, 5108-21. Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures',
Nat Protoc
.
3(7)
, 1213-27.