1RPE: Base Pair Morphology Step Parameters

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NDB ID: PDR011 PDB ID: 1RPE

Base Pair Morphology Step Parameters

CSV Format

Model Number	Step Number	Step Name	Shift	Slide	Rise	Tilt	Roll	Twist	X-Displacement	Y-Displacement	Helical Rise	Inclination	Tip	Helical Twist
1	1	BB_DA2DT3:DA39DT40_AA	0.174	-0.627	3.753	6.821	-3.912	30.006	-0.294	1.208	3.75	-7.397	-12.897	30.996
1	3	BB_DA4DC5:DG37DT38_AA	-1.35	-0.855	3.244	3.508	5.031	32.328	-2.327	2.954	2.923	8.935	-6.231	32.889
1	5	BB_DA6DA7:DT35DT36_AA	0.265	0.147	3.521	0.839	5.873	30.234	-0.964	-0.321	3.492	11.124	-1.59	30.798
1	6	BB_DA7DT8:DA34DT35_AA	-0.558	0.044	3.09	-0.209	0.609	34.706	-0.014	0.906	3.094	1.022	0.35	34.712
1	10	BB_DA11DT12:DA30DT31_AA	0.614	-0.324	2.615	3.571	-2.162	30.471	-0.267	-0.588	2.684	-4.089	-6.754	30.749
1	4	BB_DC5DA6:DT36DG37_AA	0.176	-0.351	3.48	-2.956	6.016	30.685	-1.838	-0.909	3.322	11.201	5.504	31.392
1	12	BB_DC13DT14:DA28DG29_AA	0.143	0.363	3.516	-1.088	1.853	44.934	0.295	-0.293	3.523	2.422	1.422	44.983
1	8	BB_DG9DT10:DA32DC33_AA	-0.087	-0.761	3.163	-1.757	-8.988	28.484	0.397	-0.197	3.246	-17.697	3.459	29.891
1	15	BB_DG16DT17:DA25DC26_AA	1.064	-0.852	3.046	-1.065	-1.766	26.394	-1.423	-2.586	3.051	-3.859	2.328	26.473
1	2	BB_DT3DA4:DT38DA39_AA	0.824	-0.313	3.143	-1.495	-6.428	39.623	0.25	-1.365	3.122	-9.403	2.187	40.147
1	7	BB_DT8DG9:DC33DA34_AA	-0.036	-0.235	3.492	-3.913	1.853	44.624	-0.487	-0.332	3.471	2.433	5.139	44.823
1	9	BB_DT10DA11:DT31DA32_AA	0.112	0.303	3.488	7.307	-3.956	45.747	0.74	0.516	3.43	-5.04	-9.308	46.455
1	11	BB_DT12DC13:DG29DA30_AA	0.639	-0.95	3.716	-1.9	7.855	32.293	-3.101	-1.464	3.357	13.854	3.351	33.262
1	13	BB_DT14DT15:DA27DA28_AA	0.325	0.708	2.878	4.599	3.664	32.745	0.686	0.122	2.955	6.435	-8.076	33.254
1	14	BB_DT15DG16:DC26DA27_AA	-0.124	-0.192	3.954	-0.049	6.745	32.405	-1.708	0.208	3.838	11.926	0.086	33.081
1	16	BB_DT17DT18:DA24DA25_AA	0.77	-1.079	3.723	1.023	-1.584	40.703	-1.349	-0.977	3.778	-2.276	-1.469	40.745
1	17	BB_DT18DT19:DA23DA24_AA	-0.026	0.18	2.841	1.155	3.598	34.29	-0.183	0.2	2.843	6.079	-1.952	34.491
1	18	BB_DT19DG20:DC22DA23_AA	-0.374	-0.241	3.715	-8.714	5.454	44.594	-0.855	-0.389	3.67	7.076	11.305	45.705

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.