A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 14-Aug-2019 number of released structures: 10334
Search for released structures

NDB ID: PDE016  PDB ID: 1RVC 


Base Pair Morphology Parameters

CSV Format

Model NumberPair NumberPair NameShearStretchStaggerBucklePropellorOpening
11C_DA2:DT11_F-0.161-0.311-0.474-12.453-6.364.608
12C_DA3:DT10_F0.172-0.180.031-3.557-6.760.953
14C_DA5:DT8_F-0.03-0.0790.0072.277-2.153-1.397
13C_DG4:DC9_F0.173-0.2130.3059.118-12.6230.64
15C_DT6:DA7_F-0.0490.161-0.09539.349-12.6886.947
16D_DA7:DT6_E0.155-0.0430.095-30.987-4.4248.878
18D_DC9:DG4_E-0.135-0.1020.251-9.31-10.6621.134
17D_DT8:DA5_E0.016-0.160.117-4.9480.141-1.234
19D_DT10:DA3_E-0.273-0.1690.0992.039-8.0573.055
110D_DT11:DA2_E0.229-0.295-0.29611.738-13.5013.275

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.