A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 14-Aug-2019 number of released structures: 10334
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NDB ID: PD0503  PDB ID: 1RZT 


Base Pair Morphology Parameters

CSV Format

Model NumberPair NumberPair NameShearStretchStaggerBucklePropellorOpening
18B_DA10:DT2_C0.743-0.010.0964.796-8.416-2.787
11B_DC1:DG4_D0.018-0.052-0.053-2.162-9.719-1.824
14B_DC4:DG1_D-0.049-0.112-0.26110.715-6.2-6.739
15B_DC7:DG5_C0.415-0.124-0.292-2.069-2.946-1.957
17B_DC9:DG3_C0.302-0.031-0.20713.418-13.802-0.663
19B_DC11:DG1_C0.311-0.182-0.66719.884-1.842-0.551
12B_DG2:DC3_D0.162-0.188-0.104-0.127-6.764-2.256
13B_DG3:DC2_D-0.089-0.1660.0774.0-4.882-3.078
16B_DG8:DC4_C-0.043-0.1050.1378.667-4.958-2.816
121F_DA10:DT2_G0.2790.0790.2513.168-19.34-5.634
118F_DC7:DG5_G0.249-0.168-0.523-2.435-1.602-3.259
120F_DC9:DG3_G0.5990.0720.01313.519-10.234-1.181
122F_DC11:DG1_G0.3720.048-0.54519.529-10.051.388
119F_DG8:DC4_G-0.0590.0860.1048.495-0.704-4.906
111H_DC2:DG3_F0.068-0.1130.26-2.939-0.646-3.01
112H_DC3:DG2_F0.332-0.286-0.1433.592-10.015-5.947
110H_DG1:DC4_F-0.146-0.217-0.534-10.161-6.175-6.572
113H_DG4:DC1_F-0.703-0.0830.042-0.508-5.921-0.339
126J_DA10:DT2_K0.315-0.0690.1788.39-12.835-7.38
114J_DC1:DG4_L0.1170.0290.031-6.56-6.926-3.001
117J_DC4:DG1_L0.11-0.049-0.56613.1073.398-5.567
123J_DC7:DG5_K-0.217-0.112-0.4780.531-5.82-6.401
125J_DC9:DG3_K0.4310.043-0.06414.238-9.643-1.584
127J_DC11:DG1_K0.111-0.229-0.33311.68-4.68-0.342
115J_DG2:DC3_L-0.445-0.1010.1072.65-7.7352.752
116J_DG3:DC2_L-0.134-0.0520.1634.696-2.388-1.628
124J_DG8:DC4_K-0.32-0.031-0.0868.389-4.687-2.987
135N_DA10:DT2_O0.1990.1560.0286.425-13.43-2.647
128N_DC1:DG4_P0.2320.0410.256-4.621-10.5842.149
131N_DC4:DG1_P0.146-0.064-0.17914.763-10.835-4.007
132N_DC7:DG5_O0.134-0.145-0.4391.856-7.326-1.978
134N_DC9:DG3_O0.304-0.117-0.34314.426-15.501-1.233
136N_DC11:DG1_O0.371-0.086-0.2915.623-9.4262.717
129N_DG2:DC3_P-0.418-0.1880.61312.399-8.9793.334
130N_DG3:DC2_P-0.396-0.2140.38510.089-7.6090.991
133N_DG8:DC4_O-0.12-0.0350.1429.258-0.601-3.661

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.