1RZT: Base Pair Morphology Parameters

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As of 31-May-2023 number of released structures: 12820

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NDB ID: PD0503 PDB ID: 1RZT

Base Pair Morphology Parameters

CSV Format

Model Number	Pair Number	Pair Name	Shear	Stretch	Stagger	Buckle	Propellor	Opening
1	8	B_DA10:DT2_C	0.743	-0.01	0.096	4.796	-8.416	-2.787
1	1	B_DC1:DG4_D	0.018	-0.052	-0.053	-2.162	-9.719	-1.824
1	4	B_DC4:DG1_D	-0.049	-0.112	-0.261	10.715	-6.2	-6.739
1	5	B_DC7:DG5_C	0.415	-0.124	-0.292	-2.069	-2.946	-1.957
1	7	B_DC9:DG3_C	0.302	-0.031	-0.207	13.418	-13.802	-0.663
1	9	B_DC11:DG1_C	0.311	-0.182	-0.667	19.884	-1.842	-0.551
1	2	B_DG2:DC3_D	0.162	-0.188	-0.104	-0.127	-6.764	-2.256
1	3	B_DG3:DC2_D	-0.089	-0.166	0.077	4.0	-4.882	-3.078
1	6	B_DG8:DC4_C	-0.043	-0.105	0.137	8.667	-4.958	-2.816
1	21	F_DA10:DT2_G	0.279	0.079	0.25	13.168	-19.34	-5.634
1	18	F_DC7:DG5_G	0.249	-0.168	-0.523	-2.435	-1.602	-3.259
1	20	F_DC9:DG3_G	0.599	0.072	0.013	13.519	-10.234	-1.181
1	22	F_DC11:DG1_G	0.372	0.048	-0.545	19.529	-10.05	1.388
1	19	F_DG8:DC4_G	-0.059	0.086	0.104	8.495	-0.704	-4.906
1	11	H_DC2:DG3_F	0.068	-0.113	0.26	-2.939	-0.646	-3.01
1	12	H_DC3:DG2_F	0.332	-0.286	-0.143	3.592	-10.015	-5.947
1	10	H_DG1:DC4_F	-0.146	-0.217	-0.534	-10.161	-6.175	-6.572
1	13	H_DG4:DC1_F	-0.703	-0.083	0.042	-0.508	-5.921	-0.339
1	26	J_DA10:DT2_K	0.315	-0.069	0.178	8.39	-12.835	-7.38
1	14	J_DC1:DG4_L	0.117	0.029	0.031	-6.56	-6.926	-3.001
1	17	J_DC4:DG1_L	0.11	-0.049	-0.566	13.107	3.398	-5.567
1	23	J_DC7:DG5_K	-0.217	-0.112	-0.478	0.531	-5.82	-6.401
1	25	J_DC9:DG3_K	0.431	0.043	-0.064	14.238	-9.643	-1.584
1	27	J_DC11:DG1_K	0.111	-0.229	-0.333	11.68	-4.68	-0.342
1	15	J_DG2:DC3_L	-0.445	-0.101	0.107	2.65	-7.735	2.752
1	16	J_DG3:DC2_L	-0.134	-0.052	0.163	4.696	-2.388	-1.628
1	24	J_DG8:DC4_K	-0.32	-0.031	-0.086	8.389	-4.687	-2.987
1	35	N_DA10:DT2_O	0.199	0.156	0.028	6.425	-13.43	-2.647
1	28	N_DC1:DG4_P	0.232	0.041	0.256	-4.621	-10.584	2.149
1	31	N_DC4:DG1_P	0.146	-0.064	-0.179	14.763	-10.835	-4.007
1	32	N_DC7:DG5_O	0.134	-0.145	-0.439	1.856	-7.326	-1.978
1	34	N_DC9:DG3_O	0.304	-0.117	-0.343	14.426	-15.501	-1.233
1	36	N_DC11:DG1_O	0.371	-0.086	-0.29	15.623	-9.426	2.717
1	29	N_DG2:DC3_P	-0.418	-0.188	0.613	12.399	-8.979	3.334
1	30	N_DG3:DC2_P	-0.396	-0.214	0.385	10.089	-7.609	0.991
1	33	N_DG8:DC4_O	-0.12	-0.035	0.142	9.258	-0.601	-3.661

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.