1RZT: Base Pair Morphology Step Parameters

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NDB ID: PD0503 PDB ID: 1RZT

Base Pair Morphology Step Parameters

CSV Format

Model Number	Step Number	Step Name	Shift	Slide	Rise	Tilt	Roll	Twist	X-Displacement	Y-Displacement	Helical Rise	Inclination	Tip	Helical Twist
1	7	BB_DA10DC11:DG1DT2_CC	0.918	-0.542	2.927	4.988	1.565	32.266	-1.211	-0.844	3.002	2.793	-8.902	32.675
1	1	BB_DC1DG2:DC3DG4_DD	0.251	0.757	3.341	1.715	9.424	36.458	-0.116	-0.154	3.433	14.751	-2.684	37.654
1	4	BB_DC7DG8:DC4DG5_CC	-0.532	0.615	3.319	-2.871	8.513	31.093	-0.474	0.423	3.399	15.481	5.221	32.334
1	6	BB_DC9DA10:DT2DG3_CC	-0.493	0.003	3.551	-3.418	8.411	38.323	-1.087	0.289	3.505	12.598	5.119	39.344
1	2	BB_DG2DG3:DC2DC3_DD	-0.259	-0.227	3.187	-3.396	5.456	35.007	-1.146	-0.057	3.128	8.977	5.587	35.574
1	3	BB_DG3DC4:DG1DC2_DD	0.465	-0.781	3.152	2.679	6.706	32.94	-2.38	-0.39	2.968	11.652	-4.655	33.701
1	5	BB_DG8DC9:DG3DC4_CC	-0.157	-0.168	3.152	0.525	3.969	31.374	-1.014	0.382	3.105	7.301	-0.966	31.622
1	18	FF_DA10DC11:DG1DT2_GG	1.261	-0.304	3.168	8.083	3.987	36.262	-1.006	-0.896	3.313	6.288	-12.746	37.328
1	15	FF_DC7DG8:DC4DG5_GG	-0.609	0.754	3.296	-4.538	9.891	31.572	-0.424	0.265	3.423	17.539	8.046	33.35
1	17	FF_DC9DA10:DT2DG3_GG	-0.65	0.071	3.275	0.439	6.285	34.45	-0.83	1.148	3.229	10.503	-0.733	35.005
1	16	FF_DG8DC9:DG3DC4_GG	0.191	-0.167	3.246	-0.254	2.724	33.13	-0.742	-0.377	3.221	4.766	0.444	33.24
1	9	HH_DC2DC3:DG2DG3_FF	-0.005	-0.227	3.119	3.609	2.945	36.055	-0.754	0.487	3.077	4.734	-5.801	36.345
1	10	HH_DC3DG4:DC1DG2_FF	0.101	0.645	3.483	-2.33	9.578	33.42	-0.516	-0.557	3.515	16.222	3.947	34.803
1	8	HH_DG1DC2:DG3DC4_FF	-0.377	-0.611	3.094	-6.976	9.81	31.831	-2.511	-0.397	2.808	17.14	12.187	33.976
1	11	HJ_DG4DC1:DG4DC1_LF	-0.455	0.067	3.376	-0.482	0.659	42.427	0.024	0.578	3.381	0.91	0.666	42.435
1	22	JJ_DA10DC11:DG1DT2_KK	1.053	-0.71	3.169	3.36	-1.029	35.344	-1.016	-1.242	3.271	-1.689	-5.517	35.513
1	12	JJ_DC1DG2:DC3DG4_LL	0.621	1.179	3.114	0.016	3.186	37.038	1.44	-0.973	3.201	5.004	-0.025	37.17
1	19	JJ_DC7DG8:DC4DG5_KK	-0.326	0.854	3.371	-4.288	8.502	33.019	0.02	-0.168	3.491	14.586	7.355	34.328
1	21	JJ_DC9DA10:DT2DG3_KK	-0.602	0.158	3.435	-0.149	8.247	36.755	-0.888	0.912	3.393	12.879	0.233	37.638
1	13	JJ_DG2DG3:DC2DC3_LL	-0.521	-0.146	3.266	-2.426	4.362	36.231	-0.834	0.495	3.254	6.973	3.879	36.562
1	14	JJ_DG3DC4:DG1DC2_LL	0.495	-0.489	3.193	5.279	6.122	32.246	-1.855	-0.003	3.091	10.812	-9.322	33.218
1	20	JJ_DG8DC9:DG3DC4_KK	0.173	-0.253	3.166	-0.22	3.075	32.199	-0.979	-0.349	3.128	5.529	0.396	32.342
1	29	NN_DA10DC11:DG1DT2_OO	1.03	-0.491	3.043	2.433	1.154	36.619	-0.927	-1.324	3.087	1.833	-3.866	36.714
1	23	NN_DC1DG2:DC3DG4_PP	0.602	0.853	2.941	-2.46	3.359	35.744	0.948	-1.292	2.96	5.449	3.991	35.978
1	26	NN_DC7DG8:DC4DG5_OO	-0.58	0.664	3.32	-4.504	9.461	31.875	-0.495	0.222	3.42	16.673	7.938	33.511
1	28	NN_DC9DA10:DT2DG3_OO	-0.379	0.245	3.527	-2.316	10.01	37.042	-0.993	0.26	3.49	15.396	3.563	38.392
1	24	NN_DG2DG3:DC2DC3_PP	-0.519	-0.046	3.459	-2.015	1.843	36.575	-0.342	0.533	3.476	2.931	3.205	36.673
1	25	NN_DG3DC4:DG1DC2_PP	0.323	-0.805	3.222	2.501	6.884	33.642	-2.398	-0.17	3.019	11.722	-4.259	34.407
1	27	NN_DG8DC9:DG3DC4_OO	0.025	-0.172	3.17	3.389	2.702	30.846	-0.82	0.579	3.129	5.048	-6.331	31.142

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.