1S03: Base Pair Morphology Step Parameters

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As of 31-May-2023 number of released structures: 12820

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NDB ID: PR0111 PDB ID: 1S03

Base Pair Morphology Step Parameters

CSV Format

Model Number	Step Number	Step Name	Shift	Slide	Rise	Tilt	Roll	Twist	X-Displacement	Y-Displacement	Helical Rise	Inclination	Tip	Helical Twist
1	3	AA_A3C4:G44U45_AA	0.951	-2.656	2.854	1.542	6.617	10.461	-17.475	-3.154	1.107	32.207	-7.505	12.468
1	6	AA_A6G8:C41U42_AA	1.578	-2.319	3.459	8.847	5.934	22.724	-7.206	-0.858	3.148	14.107	-21.032	25.067
1	10	AA_A12A14:A13U38_AA	-1.844	0.03	1.961	19.177	6.372	27.321	-0.392	4.499	0.571	11.678	-35.147	33.867
1	11	AA_A14C15:G37A13_AA	-2.633	-0.88	2.079	0.313	7.837	35.197	-2.095	4.284	1.824	12.764	-0.51	36.033
1	16	AA_A19U20:A31U32_AA	0.04	-1.374	3.143	-1.728	12.195	31.068	-4.187	-0.324	2.44	21.728	3.079	33.365
1	4	AA_C4G5:C43G44_AA	-0.125	-1.608	3.451	5.132	12.424	39.841	-3.519	0.701	2.812	17.634	-7.284	41.96
1	12	AA_C15U16:A36G37_AA	0.258	-2.709	3.793	-1.462	5.144	29.433	-6.409	-0.83	3.267	10.021	2.847	29.904
1	15	AA_C18A19:U32G33_AA	-0.182	-1.633	3.365	0.318	14.236	26.81	-5.742	0.408	2.23	28.308	-0.632	30.296
1	1	AA_G1G2:C46C47_AA	1.471	-1.393	2.718	-6.187	7.003	35.596	-2.929	-2.969	2.138	11.219	9.911	36.764
1	2	AA_G2A3:U45C46_AA	-0.847	-1.615	3.586	12.247	6.869	44.415	-2.644	2.139	2.997	8.829	-15.741	46.474
1	5	AA_G5A6:U42C43_AA	-0.212	-2.406	2.985	-3.283	10.935	29.345	-6.054	-0.093	1.994	20.628	6.192	31.443
1	7	AA_G8G9:C40C41_AA	-0.979	-1.505	3.127	-1.285	8.801	31.931	-3.979	1.523	2.665	15.622	2.28	33.115
1	8	AA_G9G11:C39C40_AA	-0.101	-2.289	3.333	0.377	8.745	35.151	-4.838	0.213	2.703	14.21	-0.612	36.191
1	9	AA_G11A12:U38C39_AA	-0.869	-1.819	3.389	2.448	7.527	38.23	-3.611	1.59	2.934	11.344	-3.69	39.011
1	14	AA_G17C18:G33C34_AA	0.297	-1.431	3.333	-0.202	9.601	36.339	-3.434	-0.487	2.875	15.074	0.317	37.545
1	18	AA_G21A22:U29C30_AA	0.352	-1.922	3.116	-0.273	2.749	29.408	-4.311	-0.744	2.925	5.4	0.537	29.535
1	13	AA_U16G17:C34A36_AA	2.587	-1.022	3.11	-4.517	8.955	55.881	-1.526	-2.951	2.731	9.47	4.777	56.703
1	17	AA_U20G21:C30A31_AA	0.406	-1.585	3.267	-0.494	7.209	30.272	-4.256	-0.846	2.817	13.563	0.929	31.103
1	21	BB_A3C4:G44U45_BB	-0.03	-1.419	3.046	2.693	8.882	31.504	-3.845	0.457	2.552	15.931	-4.83	32.81
1	24	BB_A6G8:C41U42_BB	1.202	-2.146	3.43	8.868	7.003	29.673	-5.257	-0.519	3.081	13.092	-16.578	31.707
1	28	BB_A12A14:A13U38_BB	-1.84	0.062	1.852	19.751	3.771	27.692	-0.131	4.377	0.474	6.852	-35.885	34.107
1	29	BB_A14C15:G37A13_BB	-2.676	-0.741	2.004	2.02	7.033	35.855	-1.732	4.423	1.685	11.279	-3.24	36.57
1	34	BB_A19U20:A31U32_BB	-0.048	-1.303	3.227	-2.348	8.372	30.733	-3.795	-0.312	2.78	15.413	4.324	31.911
1	22	BB_C4G5:C43G44_BB	0.53	-2.19	3.176	5.181	7.371	27.465	-5.869	-0.025	2.568	15.021	-10.559	28.878
1	30	BB_C15U16:A36G37_BB	0.311	-2.699	3.945	-2.039	8.539	27.369	-7.518	-1.124	2.955	17.485	4.174	28.717
1	33	BB_C18A19:U32G33_BB	-0.271	-1.717	3.212	1.25	15.89	28.273	-5.466	0.673	1.978	29.73	-2.338	32.376
1	19	BB_G1G2:C46C47_BB	0.202	-1.38	3.254	-0.664	-0.128	34.552	-2.304	-0.443	3.255	-0.215	1.118	34.559
1	20	BB_G2A3:U45C46_BB	-0.044	-1.587	3.015	-3.233	7.881	36.045	-3.426	-0.31	2.616	12.522	5.137	37.005
1	23	BB_G5A6:U42C43_BB	0.075	-1.553	3.051	0.651	8.638	32.608	-3.906	-0.036	2.568	15.055	-1.135	33.709
1	25	BB_G8G9:C40C41_BB	-1.034	-1.733	3.155	-2.284	4.155	33.483	-3.613	1.43	2.987	7.167	3.94	33.808
1	26	BB_G9G11:C39C40_BB	-0.843	-1.839	3.213	2.553	6.297	36.748	-3.644	1.629	2.808	9.884	-4.007	37.349
1	27	BB_G11A12:U38C39_BB	-0.992	-1.744	3.406	-0.689	9.421	38.221	-3.691	1.394	2.929	14.125	1.034	39.329
1	32	BB_G17C18:G33C34_BB	0.344	-1.454	3.436	-0.034	8.37	36.625	-3.357	-0.539	3.042	13.109	0.054	37.537
1	36	BB_G21A22:U29C30_BB	0.122	-1.899	3.086	-1.668	5.2	29.284	-4.666	-0.548	2.705	10.173	3.263	29.778
1	31	BB_U16G17:C34A36_BB	2.591	-1.118	3.105	-6.752	9.147	56.467	-1.6	-3.016	2.611	9.56	7.057	57.508
1	35	BB_U20G21:C30A31_BB	0.493	-1.59	3.36	4.002	8.984	29.66	-4.608	-0.179	2.811	16.972	-7.56	31.214

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.