A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 17-Aug-2022 number of released structures: 12237
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NDB ID: PD0509  PDB ID: 1S0N 


Base Pair Morphology Parameters

CSV Format

Model NumberPair NumberPair NameShearStretchStaggerBucklePropellorOpening
14P_DA4:DT15_T0.42-0.231-0.526-7.3230.704-4.41
18P_DA8:DT11_T0.512-0.353-0.194-7.673-9.579-4.711
111P_DA11:DT8_T0.676-0.093-0.1214.5912.653-6.928
13P_DC3:DG16_T-0.356-0.277-0.2786.311-4.273-12.015
15P_DC5:DG14_T0.2210.150.403-4.2893.204-2.072
110P_DC10:DG9_T-0.231-0.288-0.1919.0370.713-7.544
112P_DC12:DG7_T0.213-0.49-0.2237.5588.7511.359
11P_DG1:DC18_T-0.232-0.243-0.2716.388-4.856-9.011
12P_DG2:DC17_T-0.6470.0480.26322.9210.3535.056
17P_DG7:DC12_T-0.27-0.25-0.064-0.21-7.96-0.242
113P_DG13:DC6_T0.217-0.683-0.71-12.921-7.624-2.696
16P_DT6:DA13_T-0.427-0.2650.214-9.672-3.431-2.678
19P_DT9:DA10_T0.282-0.601-0.35-0.976-8.499-2.892

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.