1S0N: Base Pair Morphology Parameters

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As of 17-Aug-2022 number of released structures: 12237

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NDB ID: PD0509 PDB ID: 1S0N

Base Pair Morphology Parameters

CSV Format

Model Number	Pair Number	Pair Name	Shear	Stretch	Stagger	Buckle	Propellor	Opening
1	4	P_DA4:DT15_T	0.42	-0.231	-0.526	-7.323	0.704	-4.41
1	8	P_DA8:DT11_T	0.512	-0.353	-0.194	-7.673	-9.579	-4.711
1	11	P_DA11:DT8_T	0.676	-0.093	-0.121	4.591	2.653	-6.928
1	3	P_DC3:DG16_T	-0.356	-0.277	-0.278	6.311	-4.273	-12.015
1	5	P_DC5:DG14_T	0.221	0.15	0.403	-4.289	3.204	-2.072
1	10	P_DC10:DG9_T	-0.231	-0.288	-0.191	9.037	0.713	-7.544
1	12	P_DC12:DG7_T	0.213	-0.49	-0.223	7.558	8.751	1.359
1	1	P_DG1:DC18_T	-0.232	-0.243	-0.271	6.388	-4.856	-9.011
1	2	P_DG2:DC17_T	-0.647	0.048	0.263	22.921	0.353	5.056
1	7	P_DG7:DC12_T	-0.27	-0.25	-0.064	-0.21	-7.96	-0.242
1	13	P_DG13:DC6_T	0.217	-0.683	-0.71	-12.921	-7.624	-2.696
1	6	P_DT6:DA13_T	-0.427	-0.265	0.214	-9.672	-3.431	-2.678
1	9	P_DT9:DA10_T	0.282	-0.601	-0.35	-0.976	-8.499	-2.892

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.