1S0N: Base Pair Morphology Step Parameters

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NDB ID: PD0509 PDB ID: 1S0N

Base Pair Morphology Step Parameters

CSV Format

Model Number	Step Number	Step Name	Shift	Slide	Rise	Tilt	Roll	Twist	X-Displacement	Y-Displacement	Helical Rise	Inclination	Tip	Helical Twist
1	4	PP_DA4DC5:DG14DT15_TT	-0.19	-0.686	3.483	-6.079	4.881	29.834	-2.296	-0.894	3.305	9.282	11.56	30.813
1	8	PP_DA8DT9:DA10DT11_TT	0.125	-0.589	3.154	3.238	-1.726	33.13	-0.749	0.305	3.177	-3.016	-5.656	33.327
1	11	PP_DA11DC12:DG7DT8_TT	0.45	-1.004	3.467	-1.542	8.703	22.269	-5.246	-1.586	2.839	21.478	3.806	23.939
1	3	PP_DC3DA4:DT15DG16_TT	0.941	-0.423	3.712	3.423	1.181	40.768	-0.753	-0.918	3.763	1.691	-4.902	40.922
1	5	PP_DC5DT6:DA13DG14_TT	-0.45	-0.763	3.438	3.083	8.784	34.83	-2.506	1.174	3.111	14.36	-5.04	36.016
1	10	PP_DC10DA11:DT8DG9_TT	0.765	-0.218	3.481	0.603	8.116	37.223	-1.426	-1.091	3.373	12.531	-0.931	38.072
1	12	PP_DC12DG13:DC6DG7_TT	-0.632	-0.598	4.048	1.768	6.389	30.929	-2.535	1.558	3.81	11.811	-3.268	31.615
1	1	PP_DG1DG2:DC17DC18_TT	1.45	-0.198	2.979	-3.06	0.591	31.083	-0.467	-3.21	2.822	1.099	5.692	31.235
1	2	PP_DG2DC3:DG16DC17_TT	-1.872	-0.839	3.878	-4.036	10.15	37.023	-2.758	2.245	3.706	15.573	6.193	38.547
1	7	PP_DG7DA8:DT11DC12_TT	-0.257	-0.653	3.586	1.845	1.629	40.659	-1.134	0.591	3.544	2.341	-2.652	40.73
1	6	PP_DT6DG7:DC12DA13_TT	-0.272	1.016	3.246	0.752	1.033	38.002	1.428	0.512	3.266	1.586	-1.154	38.023
1	9	PP_DT9DC10:DG9DA10_TT	0.093	-0.682	3.173	0.915	3.246	29.916	-1.95	0.001	3.085	6.262	-1.766	30.101

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.