A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 17-Aug-2022 number of released structures: 12237
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NDB ID: PD0509  PDB ID: 1S0N 


Base Pair Morphology Step Parameters

CSV Format

Model NumberStep NumberStep NameShiftSlideRiseTiltRollTwistX-DisplacementY-DisplacementHelical RiseInclinationTipHelical Twist
14PP_DA4DC5:DG14DT15_TT-0.19-0.6863.483-6.0794.88129.834-2.296-0.8943.3059.28211.5630.813
18PP_DA8DT9:DA10DT11_TT0.125-0.5893.1543.238-1.72633.13-0.7490.3053.177-3.016-5.65633.327
111PP_DA11DC12:DG7DT8_TT0.45-1.0043.467-1.5428.70322.269-5.246-1.5862.83921.4783.80623.939
13PP_DC3DA4:DT15DG16_TT0.941-0.4233.7123.4231.18140.768-0.753-0.9183.7631.691-4.90240.922
15PP_DC5DT6:DA13DG14_TT-0.45-0.7633.4383.0838.78434.83-2.5061.1743.11114.36-5.0436.016
110PP_DC10DA11:DT8DG9_TT0.765-0.2183.4810.6038.11637.223-1.426-1.0913.37312.531-0.93138.072
112PP_DC12DG13:DC6DG7_TT-0.632-0.5984.0481.7686.38930.929-2.5351.5583.8111.811-3.26831.615
11PP_DG1DG2:DC17DC18_TT1.45-0.1982.979-3.060.59131.083-0.467-3.212.8221.0995.69231.235
12PP_DG2DC3:DG16DC17_TT-1.872-0.8393.878-4.03610.1537.023-2.7582.2453.70615.5736.19338.547
17PP_DG7DA8:DT11DC12_TT-0.257-0.6533.5861.8451.62940.659-1.1340.5913.5442.341-2.65240.73
16PP_DT6DG7:DC12DA13_TT-0.2721.0163.2460.7521.03338.0021.4280.5123.2661.586-1.15438.023
19PP_DT9DC10:DG9DA10_TT0.093-0.6823.1730.9153.24629.916-1.950.0013.0856.262-1.76630.101

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.