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As of 19-Jan-2022 number of released structures: 11891
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NDB ID: PD0510  PDB ID: 1S0O 


Base Pair Morphology Parameters

CSV Format

Model NumberPair NumberPair NameShearStretchStaggerBucklePropellorOpening
16C_DA1806:DT1913_D0.1680.168-0.2-1.603-6.3060.253
17C_DA1807:DT1912_D-0.0820.0380.15-0.07-10.71710.169
110C_DA1810:DT1909_D0.433-0.1480.089-3.821-11.11-0.4
111C_DC1811:DG1908_D-0.072-0.0560.2852.973-6.0652.358
11C_DG1801:DC1918_D-0.161-0.104-0.41-4.448-5.166-1.779
12C_DG1802:DC1917_D-0.162-0.12-0.229.03-2.892.813
13C_DG1803:DC1916_D-0.254-0.1760.25111.986-4.864-6.354
14C_DG1804:DC1915_D-0.402-0.181-0.3861.146-5.1260.658
15C_DG1805:DC1914_D0.3610.214-0.642-2.1618.447-1.016
18C_DG1808:DC1911_D-0.1290.153-0.0020.194-3.2176.75
19C_DG1809:DC1910_D-0.2920.067-0.093-2.508-11.2926.369
112C_DT1812:DA1907_D0.206-0.0470.17819.9350.9445.474
118E_DA1806:DT1913_F0.0330.032-0.2281.222-12.7354.582
119E_DA1807:DT1912_F0.326-0.1570.2976.14-10.9930.054
122E_DA1810:DT1909_F0.213-0.004-0.226-4.325-6.87-1.776
123E_DC1811:DG1908_F0.1370.033-0.0054.938-0.632.197
125E_DC1813:DG1905_F-0.199-0.140.47-15.3431.103-1.989
113E_DG1801:DC1918_F-0.107-0.0340.066-0.748-1.451-4.486
114E_DG1802:DC1917_F-0.287-0.1520.0298.607-6.3120.462
115E_DG1803:DC1916_F-0.103-0.1610.1263.987-8.183-4.323
116E_DG1804:DC1915_F-0.120.005-0.2052.112-7.631.383
117E_DG1805:DC1914_F0.077-0.092-0.1142.796-7.045-2.102
120E_DG1808:DC1911_F-0.026-0.1830.0213.075-8.4991.641
121E_DG1809:DC1910_F-0.235-0.109-0.226-8.368-10.1582.523
124E_DT1812:DA1907_F-0.029-0.187-0.3294.685-8.8541.966

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.