A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 19-Jan-2022 number of released structures: 11891
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NDB ID: PD0510  PDB ID: 1S0O 


Base Pair Morphology Step Parameters

CSV Format

Model NumberStep NumberStep NameShiftSlideRiseTiltRollTwistX-DisplacementY-DisplacementHelical RiseInclinationTipHelical Twist
16CC_DA1806DA1807:DT1912DT1913_DD0.249-0.143.154-1.4019.0630.008-1.893-0.7152.97217.0052.6331.346
17CC_DA1807DG1808:DC1911DT1912_DD-0.3670.1423.245-0.2058.60833.962-1.060.5793.18714.4510.34535.005
110CC_DA1810DC1811:DG1908DT1909_DD0.202-0.6073.06-1.8452.1926.059-1.888-0.9082.9794.8384.07526.213
111CC_DC1811DT1812:DA1907DG1908_DD0.494-0.543.058-0.124-0.44932.524-0.89-0.9013.063-0.8020.22232.527
11CC_DG1801DG1802:DC1917DC1918_DD0.9130.4833.117-1.1352.47831.0060.448-1.9083.1114.6242.11731.122
12CC_DG1802DG1803:DC1916DC1917_DD-1.382-0.4093.2-7.2934.87732.774-1.4981.1793.3288.45512.64433.897
13CC_DG1803DG1804:DC1915DC1916_DD1.222-0.7273.6626.24910.23632.431-3.006-0.9723.45217.593-10.7434.522
14CC_DG1804DG1805:DC1914DC1915_DD-0.475-1.0233.4452.9410.68226.656-4.4121.6032.7721.999-6.05528.829
15CC_DG1805DA1806:DT1913DC1914_DD-0.231-0.0353.277-2.1617.41831.915-1.340.0373.19713.253.8632.813
18CC_DG1808DG1809:DC1910DC1911_DD0.063-0.5583.3970.9534.50132.248-1.8020.0593.2918.052-1.70632.566
19CC_DG1809DA1810:DT1909DC1910_DD-0.989-0.3093.344-4.3182.97140.524-0.7810.9273.3974.2686.20240.848
117EE_DA1806DA1807:DT1912DT1913_FF0.0080.1213.144-3.7270.6734.3760.104-0.5673.1281.136.28334.578
118EE_DA1807DG1808:DC1911DT1912_FF0.003-0.3613.4210.512-0.31937.216-0.5210.0663.423-0.5-0.80237.221
121EE_DA1810DC1811:DG1908DT1909_FF0.94-0.73.179-3.7890.54231.422-1.379-2.3913.0350.9956.96431.649
122EE_DC1811DT1812:DA1907DG1908_FF0.176-0.683.3952.007-1.90228.754-0.9210.1153.436-3.819-4.0328.884
112EE_DG1801DG1802:DC1917DC1918_FF0.8460.0353.1791.4342.51430.347-0.423-1.3293.2074.788-2.73230.482
113EE_DG1802DG1803:DC1916DC1917_FF-1.408-0.1043.342-5.2793.52437.264-0.6371.4613.4785.4668.18837.782
114EE_DG1803DG1804:DC1915DC1916_FF0.866-0.2493.383.9216.78533.799-1.503-0.8253.34511.479-6.63434.669
115EE_DG1804DG1805:DC1914DC1915_FF-0.451-0.1853.201-1.5729.80232.64-1.8370.5263.03816.9592.7234.077
116EE_DG1805DA1806:DT1913DC1914_FF-0.4250.1083.211-0.4838.16537.268-0.8550.5913.16912.5910.74438.124
119EE_DG1808DG1809:DC1910DC1911_FF-0.038-0.5953.5362.3252.95735.231-1.4450.4293.4674.868-3.82835.425
120EE_DG1809DA1810:DT1909DC1910_FF-0.3640.073.246-0.7115.18533.951-0.6890.5063.2288.8151.20834.341
123EE_DT1812DC1813:DG1905DA1907_FF0.347-0.893.952-1.15513.1527.868-4.635-0.9143.20125.5672.24530.78

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.