A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 16-Oct-2019 number of released structures: 10422
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NDB ID: BD0068  PDB ID: 1S1K 


Base Pair Morphology Parameters

CSV Format

Model NumberPair NumberPair NameShearStretchStaggerBucklePropellorOpening
13A_1AP3:DT8_A0.1310.006-0.239-4.157-5.707-2.518
16A_DA6:DT5_A0.171-0.1780.331.504-11.056-2.231
11A_DC1:DG10_A0.772-0.507-0.0440.319-0.481-3.917
12A_DC2:DG9_A0.286-0.0770.246-3.987-8.813-5.656
17A_DC7:DG4_A0.331-0.0170.2121.85-11.463-3.866
14A_DG4:DC7_A-0.331-0.0170.212-1.85-11.463-3.866
19A_DG9:DC2_A-0.286-0.0770.2463.987-8.813-5.656
110A_DG10:DC1_A-0.772-0.507-0.044-0.319-0.481-3.917
15A_DT5:DA6_A-0.171-0.1780.33-1.504-11.056-2.231
18A_DT8:1AP3_A-0.1310.006-0.2394.157-5.707-2.518

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.