1S97: Base Pair Morphology Parameters

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NDB ID: PD0516 PDB ID: 1S97

Base Pair Morphology Parameters

CSV Format

Model Number	Pair Number	Pair Name	Shear	Stretch	Stagger	Buckle	Propellor	Opening
1	6	E_DA6:DT13_I	0.035	-0.209	0.51	4.925	-20.143	9.358
1	7	E_DA7:DT12_I	0.041	-0.229	0.599	6.194	-16.53	7.887
1	10	E_DA10:DT9_I	-0.035	-0.173	0.235	-2.375	-11.103	3.702
1	11	E_DC11:DG8_I	0.459	-0.13	-0.092	5.75	-1.251	5.44
1	1	E_DG1:DC18_I	-0.076	-0.088	0.288	0.197	-9.671	1.056
1	2	E_DG2:DC17_I	-0.009	0.015	0.427	12.613	-13.365	7.36
1	3	E_DG3:DC16_I	-0.148	-0.151	0.521	9.241	-19.136	2.722
1	4	E_DG4:DC15_I	-0.212	-0.125	0.772	9.796	-18.263	4.675
1	5	E_DG5:DC14_I	-0.349	-0.149	0.707	8.3	-13.386	3.946
1	8	E_DG8:DC11_I	-0.257	-0.18	0.69	0.447	-14.448	4.443
1	9	E_DG9:DC10_I	-0.411	-0.14	0.121	-9.278	-18.603	5.474
1	13	E_DG13:DT6_I	0.097	-0.826	-0.047	17.854	-10.815	162.385
1	12	E_DT12:DA7_I	-0.714	-0.257	0.278	7.474	-12.311	28.247
1	19	F_DA6:DT13_J	-0.005	-0.257	0.611	-0.582	-18.552	12.043
1	20	F_DA7:DT12_J	0.028	-0.2	0.539	0.159	-14.883	8.036
1	23	F_DA10:DT9_J	-0.015	-0.164	0.155	-5.421	-11.922	4.778
1	24	F_DC11:DG8_J	0.292	-0.131	0.185	1.194	-4.566	6.371
1	14	F_DG1:DC18_J	-0.049	-0.02	0.176	-0.581	-11.352	2.11
1	15	F_DG2:DC17_J	-0.059	0.05	0.644	16.167	-8.182	6.213
1	16	F_DG3:DC16_J	-0.115	-0.241	0.86	9.144	-17.4	-0.558
1	17	F_DG4:DC15_J	-0.279	-0.155	0.735	4.231	-16.127	3.562
1	18	F_DG5:DC14_J	-0.403	-0.163	0.492	-2.771	-22.724	5.451
1	21	F_DG8:DC11_J	-0.243	-0.277	0.83	-1.504	-16.056	2.747
1	22	F_DG9:DC10_J	-0.383	-0.123	0.034	-11.761	-16.221	3.581
1	26	F_DG13:DT6_J	0.155	-0.838	-0.313	16.123	-13.76	160.747
1	25	F_DT12:DA7_J	-0.778	-0.235	0.175	3.719	-15.793	30.324
1	32	G_DA6:DT13_K	0.025	-0.151	0.341	2.295	-21.349	11.774
1	33	G_DA7:DT12_K	0.179	-0.207	0.571	7.878	-23.952	7.314
1	36	G_DA10:DT9_K	0.071	-0.117	0.229	-5.39	-12.642	4.254
1	37	G_DC11:DG8_K	0.282	-0.09	0.416	-3.108	0.674	7.299
1	27	G_DG1:DC18_K	-0.09	-0.06	0.441	4.768	-5.531	1.228
1	28	G_DG2:DC17_K	-0.073	-0.03	0.664	14.933	-11.511	4.584
1	29	G_DG3:DC16_K	-0.103	-0.122	0.48	5.916	-23.233	2.618
1	30	G_DG4:DC15_K	-0.308	-0.219	0.8	1.36	-17.845	0.567
1	31	G_DG5:DC14_K	-0.333	-0.097	0.43	-5.575	-19.153	5.637
1	34	G_DG8:DC11_K	-0.134	-0.167	0.514	-1.437	-18.709	0.508
1	35	G_DG9:DC10_K	-0.406	-0.051	-0.051	-18.053	-22.139	3.3
1	39	G_DG13:DT6_K	-0.309	-0.402	0.014	21.157	-10.011	156.79
1	38	G_DT12:DA7_K	-0.459	-0.161	0.329	-2.121	-17.323	25.48
1	45	H_DA6:DT13_L	0.113	-0.197	0.576	6.131	-18.755	9.981
1	46	H_DA7:DT12_L	0.113	-0.197	0.411	7.756	-22.715	4.726
1	49	H_DA10:DT9_L	0.003	-0.207	0.36	-2.6	-15.659	6.491
1	50	H_DC11:DG8_L	0.319	-0.078	0.212	-2.586	0.124	6.835
1	40	H_DG1:DC18_L	-0.197	-0.058	0.014	-4.414	-12.369	1.887
1	41	H_DG2:DC17_L	-0.192	-0.026	0.67	14.658	-10.324	5.255
1	42	H_DG3:DC16_L	-0.098	-0.128	0.957	15.122	-16.917	1.122
1	43	H_DG4:DC15_L	-0.096	-0.087	0.553	4.241	-20.798	3.106
1	44	H_DG5:DC14_L	-0.269	-0.032	0.569	8.295	-13.058	7.442
1	47	H_DG8:DC11_L	-0.131	-0.054	0.344	-1.205	-18.692	3.99
1	48	H_DG9:DC10_L	-0.335	-0.107	-0.095	-12.894	-22.212	6.575
1	51	H_DT12:DA7_L	-0.453	-0.137	0.452	-3.615	-13.245	23.135

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.