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A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 29-Jun-2022 number of released structures: 12153
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NDB ID:
PD0516
PDB ID:
1S97
 
Base Pair Morphology Parameters
CSV Format
Model Number
Pair Number
Pair Name
Shear
Stretch
Stagger
Buckle
Propellor
Opening
1
6
E_DA6:DT13_I
0.035
-0.209
0.51
4.925
-20.143
9.358
1
7
E_DA7:DT12_I
0.041
-0.229
0.599
6.194
-16.53
7.887
1
10
E_DA10:DT9_I
-0.035
-0.173
0.235
-2.375
-11.103
3.702
1
11
E_DC11:DG8_I
0.459
-0.13
-0.092
5.75
-1.251
5.44
1
1
E_DG1:DC18_I
-0.076
-0.088
0.288
0.197
-9.671
1.056
1
2
E_DG2:DC17_I
-0.009
0.015
0.427
12.613
-13.365
7.36
1
3
E_DG3:DC16_I
-0.148
-0.151
0.521
9.241
-19.136
2.722
1
4
E_DG4:DC15_I
-0.212
-0.125
0.772
9.796
-18.263
4.675
1
5
E_DG5:DC14_I
-0.349
-0.149
0.707
8.3
-13.386
3.946
1
8
E_DG8:DC11_I
-0.257
-0.18
0.69
0.447
-14.448
4.443
1
9
E_DG9:DC10_I
-0.411
-0.14
0.121
-9.278
-18.603
5.474
1
13
E_DG13:DT6_I
0.097
-0.826
-0.047
17.854
-10.815
162.385
1
12
E_DT12:DA7_I
-0.714
-0.257
0.278
7.474
-12.311
28.247
1
19
F_DA6:DT13_J
-0.005
-0.257
0.611
-0.582
-18.552
12.043
1
20
F_DA7:DT12_J
0.028
-0.2
0.539
0.159
-14.883
8.036
1
23
F_DA10:DT9_J
-0.015
-0.164
0.155
-5.421
-11.922
4.778
1
24
F_DC11:DG8_J
0.292
-0.131
0.185
1.194
-4.566
6.371
1
14
F_DG1:DC18_J
-0.049
-0.02
0.176
-0.581
-11.352
2.11
1
15
F_DG2:DC17_J
-0.059
0.05
0.644
16.167
-8.182
6.213
1
16
F_DG3:DC16_J
-0.115
-0.241
0.86
9.144
-17.4
-0.558
1
17
F_DG4:DC15_J
-0.279
-0.155
0.735
4.231
-16.127
3.562
1
18
F_DG5:DC14_J
-0.403
-0.163
0.492
-2.771
-22.724
5.451
1
21
F_DG8:DC11_J
-0.243
-0.277
0.83
-1.504
-16.056
2.747
1
22
F_DG9:DC10_J
-0.383
-0.123
0.034
-11.761
-16.221
3.581
1
26
F_DG13:DT6_J
0.155
-0.838
-0.313
16.123
-13.76
160.747
1
25
F_DT12:DA7_J
-0.778
-0.235
0.175
3.719
-15.793
30.324
1
32
G_DA6:DT13_K
0.025
-0.151
0.341
2.295
-21.349
11.774
1
33
G_DA7:DT12_K
0.179
-0.207
0.571
7.878
-23.952
7.314
1
36
G_DA10:DT9_K
0.071
-0.117
0.229
-5.39
-12.642
4.254
1
37
G_DC11:DG8_K
0.282
-0.09
0.416
-3.108
0.674
7.299
1
27
G_DG1:DC18_K
-0.09
-0.06
0.441
4.768
-5.531
1.228
1
28
G_DG2:DC17_K
-0.073
-0.03
0.664
14.933
-11.511
4.584
1
29
G_DG3:DC16_K
-0.103
-0.122
0.48
5.916
-23.233
2.618
1
30
G_DG4:DC15_K
-0.308
-0.219
0.8
1.36
-17.845
0.567
1
31
G_DG5:DC14_K
-0.333
-0.097
0.43
-5.575
-19.153
5.637
1
34
G_DG8:DC11_K
-0.134
-0.167
0.514
-1.437
-18.709
0.508
1
35
G_DG9:DC10_K
-0.406
-0.051
-0.051
-18.053
-22.139
3.3
1
39
G_DG13:DT6_K
-0.309
-0.402
0.014
21.157
-10.011
156.79
1
38
G_DT12:DA7_K
-0.459
-0.161
0.329
-2.121
-17.323
25.48
1
45
H_DA6:DT13_L
0.113
-0.197
0.576
6.131
-18.755
9.981
1
46
H_DA7:DT12_L
0.113
-0.197
0.411
7.756
-22.715
4.726
1
49
H_DA10:DT9_L
0.003
-0.207
0.36
-2.6
-15.659
6.491
1
50
H_DC11:DG8_L
0.319
-0.078
0.212
-2.586
0.124
6.835
1
40
H_DG1:DC18_L
-0.197
-0.058
0.014
-4.414
-12.369
1.887
1
41
H_DG2:DC17_L
-0.192
-0.026
0.67
14.658
-10.324
5.255
1
42
H_DG3:DC16_L
-0.098
-0.128
0.957
15.122
-16.917
1.122
1
43
H_DG4:DC15_L
-0.096
-0.087
0.553
4.241
-20.798
3.106
1
44
H_DG5:DC14_L
-0.269
-0.032
0.569
8.295
-13.058
7.442
1
47
H_DG8:DC11_L
-0.131
-0.054
0.344
-1.205
-18.692
3.99
1
48
H_DG9:DC10_L
-0.335
-0.107
-0.095
-12.894
-22.212
6.575
1
51
H_DT12:DA7_L
-0.453
-0.137
0.452
-3.615
-13.245
23.135
The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures',
Nucleic Acids Res
.
31(17)
, 5108-21. Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures',
Nat Protoc
.
3(7)
, 1213-27.