A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 23-Nov-2022 number of released structures: 12471
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NDB ID: PD0516  PDB ID: 1S97 


Base Pair Morphology Parameters

CSV Format

Model NumberPair NumberPair NameShearStretchStaggerBucklePropellorOpening
16E_DA6:DT13_I0.035-0.2090.514.925-20.1439.358
17E_DA7:DT12_I0.041-0.2290.5996.194-16.537.887
110E_DA10:DT9_I-0.035-0.1730.235-2.375-11.1033.702
111E_DC11:DG8_I0.459-0.13-0.0925.75-1.2515.44
11E_DG1:DC18_I-0.076-0.0880.2880.197-9.6711.056
12E_DG2:DC17_I-0.0090.0150.42712.613-13.3657.36
13E_DG3:DC16_I-0.148-0.1510.5219.241-19.1362.722
14E_DG4:DC15_I-0.212-0.1250.7729.796-18.2634.675
15E_DG5:DC14_I-0.349-0.1490.7078.3-13.3863.946
18E_DG8:DC11_I-0.257-0.180.690.447-14.4484.443
19E_DG9:DC10_I-0.411-0.140.121-9.278-18.6035.474
113E_DG13:DT6_I0.097-0.826-0.04717.854-10.815162.385
112E_DT12:DA7_I-0.714-0.2570.2787.474-12.31128.247
119F_DA6:DT13_J-0.005-0.2570.611-0.582-18.55212.043
120F_DA7:DT12_J0.028-0.20.5390.159-14.8838.036
123F_DA10:DT9_J-0.015-0.1640.155-5.421-11.9224.778
124F_DC11:DG8_J0.292-0.1310.1851.194-4.5666.371
114F_DG1:DC18_J-0.049-0.020.176-0.581-11.3522.11
115F_DG2:DC17_J-0.0590.050.64416.167-8.1826.213
116F_DG3:DC16_J-0.115-0.2410.869.144-17.4-0.558
117F_DG4:DC15_J-0.279-0.1550.7354.231-16.1273.562
118F_DG5:DC14_J-0.403-0.1630.492-2.771-22.7245.451
121F_DG8:DC11_J-0.243-0.2770.83-1.504-16.0562.747
122F_DG9:DC10_J-0.383-0.1230.034-11.761-16.2213.581
126F_DG13:DT6_J0.155-0.838-0.31316.123-13.76160.747
125F_DT12:DA7_J-0.778-0.2350.1753.719-15.79330.324
132G_DA6:DT13_K0.025-0.1510.3412.295-21.34911.774
133G_DA7:DT12_K0.179-0.2070.5717.878-23.9527.314
136G_DA10:DT9_K0.071-0.1170.229-5.39-12.6424.254
137G_DC11:DG8_K0.282-0.090.416-3.1080.6747.299
127G_DG1:DC18_K-0.09-0.060.4414.768-5.5311.228
128G_DG2:DC17_K-0.073-0.030.66414.933-11.5114.584
129G_DG3:DC16_K-0.103-0.1220.485.916-23.2332.618
130G_DG4:DC15_K-0.308-0.2190.81.36-17.8450.567
131G_DG5:DC14_K-0.333-0.0970.43-5.575-19.1535.637
134G_DG8:DC11_K-0.134-0.1670.514-1.437-18.7090.508
135G_DG9:DC10_K-0.406-0.051-0.051-18.053-22.1393.3
139G_DG13:DT6_K-0.309-0.4020.01421.157-10.011156.79
138G_DT12:DA7_K-0.459-0.1610.329-2.121-17.32325.48
145H_DA6:DT13_L0.113-0.1970.5766.131-18.7559.981
146H_DA7:DT12_L0.113-0.1970.4117.756-22.7154.726
149H_DA10:DT9_L0.003-0.2070.36-2.6-15.6596.491
150H_DC11:DG8_L0.319-0.0780.212-2.5860.1246.835
140H_DG1:DC18_L-0.197-0.0580.014-4.414-12.3691.887
141H_DG2:DC17_L-0.192-0.0260.6714.658-10.3245.255
142H_DG3:DC16_L-0.098-0.1280.95715.122-16.9171.122
143H_DG4:DC15_L-0.096-0.0870.5534.241-20.7983.106
144H_DG5:DC14_L-0.269-0.0320.5698.295-13.0587.442
147H_DG8:DC11_L-0.131-0.0540.344-1.205-18.6923.99
148H_DG9:DC10_L-0.335-0.107-0.095-12.894-22.2126.575
151H_DT12:DA7_L-0.453-0.1370.452-3.615-13.24523.135

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.