1S97: Base Pair Morphology Step Parameters

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NDB ID: PD0516 PDB ID: 1S97

Base Pair Morphology Step Parameters

CSV Format

Model Number	Step Number	Step Name	Shift	Slide	Rise	Tilt	Roll	Twist	X-Displacement	Y-Displacement	Helical Rise	Inclination	Tip	Helical Twist
1	6	EE_DA6DA7:DT12DT13_II	0.213	-0.165	3.165	0.25	1.368	36.132	-0.453	-0.309	3.158	2.204	-0.403	36.158
1	7	EE_DA7DG8:DC11DT12_II	0.134	-0.578	3.343	-3.227	-3.074	35.625	-0.487	-0.692	3.355	-5.001	5.248	35.893
1	10	EE_DA10DC11:DG8DT9_II	0.55	-0.376	3.197	2.567	1.171	32.323	-0.874	-0.541	3.215	2.098	-4.6	32.442
1	11	EE_DC11DT12:DA7DG8_II	1.184	-0.891	3.351	-2.884	1.925	23.821	-2.75	-3.76	3.107	4.632	6.941	24.069
1	1	EE_DG1DG2:DC17DC18_II	0.871	-0.155	3.066	-0.197	-0.487	32.067	-0.198	-1.61	3.063	-0.882	0.357	32.071
1	2	EE_DG2DG3:DC16DC17_II	-1.288	-0.268	3.292	-4.582	1.417	35.9	-0.636	1.409	3.413	2.287	7.393	36.209
1	3	EE_DG3DG4:DC15DC16_II	0.367	-0.38	3.093	-1.822	6.456	36.251	-1.418	-0.812	2.963	10.267	2.898	36.845
1	4	EE_DG4DG5:DC14DC15_II	-0.145	-0.527	3.137	-0.679	7.032	30.978	-2.181	0.147	2.951	12.955	1.251	31.754
1	5	EE_DG5DA6:DT13DC14_II	-0.338	0.003	3.336	1.903	3.283	38.318	-0.41	0.752	3.305	4.987	-2.891	38.499
1	8	EE_DG8DG9:DC10DC11_II	0.027	-1.255	3.477	5.364	3.024	31.545	-2.835	0.958	3.305	5.497	-9.751	32.125
1	9	EE_DG9DA10:DT9DC10_II	-0.071	-0.325	3.098	-0.584	0.346	34.653	-0.596	0.034	3.095	0.581	0.98	34.66
1	12	EE_DT12DG13:DT6DA7_II	0.326	3.487	0.412	155.413	-77.979	-178.333	-1.742	0.166	0.43	38.99	77.707	-179.911
1	18	FF_DA6DA7:DT12DT13_JJ	-0.109	0.015	3.096	1.14	4.551	36.443	-0.564	0.32	3.071	7.24	-1.813	36.734
1	19	FF_DA7DG8:DC11DT12_JJ	0.039	-0.715	3.258	-4.742	-4.056	33.501	-0.569	-0.828	3.283	-6.962	8.138	34.061
1	22	FF_DA10DC11:DG8DT9_JJ	0.737	-0.481	3.173	-0.111	-0.565	32.501	-0.764	-1.336	3.179	-1.009	0.199	32.506
1	23	FF_DC11DT12:DA7DG8_JJ	1.273	-0.843	3.151	2.128	3.581	24.051	-3.071	-2.372	3.094	8.512	-5.057	24.403
1	13	FF_DG1DG2:DC17DC18_JJ	0.826	-0.185	2.879	-2.994	-2.159	32.354	-0.003	-1.928	2.8	-3.859	5.351	32.559
1	14	FF_DG2DG3:DC16DC17_JJ	-1.297	-0.359	3.436	-4.498	1.277	36.518	-0.755	1.399	3.551	2.027	7.141	36.806
1	15	FF_DG3DG4:DC15DC16_JJ	0.597	-0.589	3.205	1.263	5.672	36.983	-1.641	-0.77	3.102	8.874	-1.976	37.421
1	16	FF_DG4DG5:DC14DC15_JJ	-0.196	-0.474	3.255	2.183	4.166	35.257	-1.375	0.634	3.163	6.84	-3.584	35.56
1	17	FF_DG5DA6:DT13DC14_JJ	0.23	-0.124	3.159	-0.887	2.853	36.645	-0.571	-0.48	3.135	4.529	1.408	36.762
1	20	FF_DG8DG9:DC10DC11_JJ	0.102	-1.405	3.371	7.981	4.542	32.909	-3.118	1.101	3.095	7.829	-13.757	34.132
1	21	FF_DG9DA10:DT9DC10_JJ	-0.13	-0.339	3.211	0.243	1.194	33.099	-0.792	0.269	3.196	2.094	-0.427	33.121
1	24	FF_DT12DG13:DT6DA7_JJ	0.36	3.294	-0.644	156.24	-77.934	-87.82	-1.673	0.13	0.38	39.336	78.86	-176.109
1	30	GG_DA6DA7:DT12DT13_KK	0.072	0.067	3.027	-0.636	5.958	33.899	-0.747	-0.213	2.993	10.12	1.081	34.409
1	31	GG_DA7DG8:DC11DT12_KK	0.133	-0.799	3.431	-2.748	3.256	33.154	-1.948	-0.703	3.319	5.677	4.791	33.419
1	34	GG_DA10DC11:DG8DT9_KK	0.823	-0.701	3.256	-1.643	-1.472	31.192	-1.024	-1.836	3.238	-2.732	3.052	31.268
1	35	GG_DC11DT12:DA7DG8_KK	0.799	-0.872	3.088	2.829	4.991	26.991	-2.965	-1.032	2.949	10.542	-5.975	27.583
1	25	GG_DG1DG2:DC17DC18_KK	0.865	-0.382	3.089	1.882	2.537	32.987	-1.074	-1.217	3.095	4.455	-3.305	33.134
1	26	GG_DG2DG3:DC16DC17_KK	-0.967	-0.273	3.502	-0.946	0.599	35.477	-0.542	1.438	3.521	0.983	1.551	35.494
1	27	GG_DG3DG4:DC15DC16_KK	-0.028	-0.541	3.193	-3.432	4.801	37.083	-1.447	-0.39	3.092	7.491	5.355	37.533
1	28	GG_DG4DG5:DC14DC15_KK	0.729	-0.676	3.234	5.638	8.223	32.892	-2.414	-0.366	3.061	14.123	-9.683	34.33
1	29	GG_DG5DA6:DT13DC14_KK	-0.088	0.208	3.073	2.464	8.334	34.242	-0.825	0.49	3.026	13.879	-4.104	35.296
1	32	GG_DG8DG9:DC10DC11_KK	0.06	-1.601	3.572	5.258	4.105	30.086	-3.865	0.977	3.293	7.789	-9.976	30.8
1	33	GG_DG9DA10:DT9DC10_KK	-0.228	-0.397	3.061	-1.717	0.178	36.073	-0.664	0.14	3.066	0.288	2.77	36.113
1	36	GG_DT12DG13:DT6DA7_KK	0.714	3.019	-0.212	148.427	-85.548	-129.434	-1.512	0.355	0.187	42.981	74.573	-176.294
1	42	HH_DA6DA7:DT12DT13_LL	-0.337	-0.185	3.197	2.03	-1.048	35.28	-0.154	0.847	3.177	-1.726	-3.346	35.351
1	43	HH_DA7DG8:DC11DT12_LL	0.463	-0.986	3.605	-0.827	-2.211	32.656	-1.325	-0.98	3.65	-3.927	1.469	32.739
1	46	HH_DA10DC11:DG8DT9_LL	0.647	-0.766	3.39	1.841	1.568	30.487	-1.773	-0.848	3.379	2.975	-3.494	30.58
1	47	HH_DC11DT12:DA7DG8_LL	0.76	-0.837	3.302	-2.414	3.631	29.047	-2.419	-2.009	3.104	7.187	4.779	29.365
1	37	HH_DG1DG2:DC17DC18_LL	0.793	-0.178	2.765	-4.944	-2.018	31.631	-0.022	-2.172	2.621	-3.669	8.99	32.067
1	38	HH_DG2DG3:DC16DC17_LL	-0.957	-0.51	3.178	-4.024	-1.216	37.428	-0.634	0.966	3.274	-1.888	6.246	37.655
1	39	HH_DG3DG4:DC15DC16_LL	0.019	-0.474	3.54	2.347	6.343	35.715	-1.709	0.321	3.403	10.229	-3.786	36.329
1	40	HH_DG4DG5:DC14DC15_LL	0.709	-0.222	3.042	2.102	9.032	33.049	-1.695	-0.896	2.921	15.501	-3.608	34.29
1	41	HH_DG5DA6:DT13DC14_LL	-0.192	0.171	3.312	0.481	10.648	34.093	-1.298	0.385	3.217	17.634	-0.797	35.673
1	44	HH_DG8DG9:DC10DC11_LL	-0.346	-1.271	3.585	3.295	0.939	33.085	-2.39	1.202	3.499	1.643	-5.767	33.257
1	45	HH_DG9DA10:DT9DC10_LL	0.079	-0.417	3.055	-3.706	-1.158	33.588	-0.542	-0.695	3.041	-1.996	6.386	33.805

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.