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As of 29-Jun-2022 number of released structures: 12153
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NDB ID:
PD0516
PDB ID:
1S97
 
Base Pair Morphology Step Parameters
CSV Format
Model Number
Step Number
Step Name
Shift
Slide
Rise
Tilt
Roll
Twist
X-Displacement
Y-Displacement
Helical Rise
Inclination
Tip
Helical Twist
1
6
EE_DA6DA7:DT12DT13_II
0.213
-0.165
3.165
0.25
1.368
36.132
-0.453
-0.309
3.158
2.204
-0.403
36.158
1
7
EE_DA7DG8:DC11DT12_II
0.134
-0.578
3.343
-3.227
-3.074
35.625
-0.487
-0.692
3.355
-5.001
5.248
35.893
1
10
EE_DA10DC11:DG8DT9_II
0.55
-0.376
3.197
2.567
1.171
32.323
-0.874
-0.541
3.215
2.098
-4.6
32.442
1
11
EE_DC11DT12:DA7DG8_II
1.184
-0.891
3.351
-2.884
1.925
23.821
-2.75
-3.76
3.107
4.632
6.941
24.069
1
1
EE_DG1DG2:DC17DC18_II
0.871
-0.155
3.066
-0.197
-0.487
32.067
-0.198
-1.61
3.063
-0.882
0.357
32.071
1
2
EE_DG2DG3:DC16DC17_II
-1.288
-0.268
3.292
-4.582
1.417
35.9
-0.636
1.409
3.413
2.287
7.393
36.209
1
3
EE_DG3DG4:DC15DC16_II
0.367
-0.38
3.093
-1.822
6.456
36.251
-1.418
-0.812
2.963
10.267
2.898
36.845
1
4
EE_DG4DG5:DC14DC15_II
-0.145
-0.527
3.137
-0.679
7.032
30.978
-2.181
0.147
2.951
12.955
1.251
31.754
1
5
EE_DG5DA6:DT13DC14_II
-0.338
0.003
3.336
1.903
3.283
38.318
-0.41
0.752
3.305
4.987
-2.891
38.499
1
8
EE_DG8DG9:DC10DC11_II
0.027
-1.255
3.477
5.364
3.024
31.545
-2.835
0.958
3.305
5.497
-9.751
32.125
1
9
EE_DG9DA10:DT9DC10_II
-0.071
-0.325
3.098
-0.584
0.346
34.653
-0.596
0.034
3.095
0.581
0.98
34.66
1
12
EE_DT12DG13:DT6DA7_II
0.326
3.487
0.412
155.413
-77.979
-178.333
-1.742
0.166
0.43
38.99
77.707
-179.911
1
18
FF_DA6DA7:DT12DT13_JJ
-0.109
0.015
3.096
1.14
4.551
36.443
-0.564
0.32
3.071
7.24
-1.813
36.734
1
19
FF_DA7DG8:DC11DT12_JJ
0.039
-0.715
3.258
-4.742
-4.056
33.501
-0.569
-0.828
3.283
-6.962
8.138
34.061
1
22
FF_DA10DC11:DG8DT9_JJ
0.737
-0.481
3.173
-0.111
-0.565
32.501
-0.764
-1.336
3.179
-1.009
0.199
32.506
1
23
FF_DC11DT12:DA7DG8_JJ
1.273
-0.843
3.151
2.128
3.581
24.051
-3.071
-2.372
3.094
8.512
-5.057
24.403
1
13
FF_DG1DG2:DC17DC18_JJ
0.826
-0.185
2.879
-2.994
-2.159
32.354
-0.003
-1.928
2.8
-3.859
5.351
32.559
1
14
FF_DG2DG3:DC16DC17_JJ
-1.297
-0.359
3.436
-4.498
1.277
36.518
-0.755
1.399
3.551
2.027
7.141
36.806
1
15
FF_DG3DG4:DC15DC16_JJ
0.597
-0.589
3.205
1.263
5.672
36.983
-1.641
-0.77
3.102
8.874
-1.976
37.421
1
16
FF_DG4DG5:DC14DC15_JJ
-0.196
-0.474
3.255
2.183
4.166
35.257
-1.375
0.634
3.163
6.84
-3.584
35.56
1
17
FF_DG5DA6:DT13DC14_JJ
0.23
-0.124
3.159
-0.887
2.853
36.645
-0.571
-0.48
3.135
4.529
1.408
36.762
1
20
FF_DG8DG9:DC10DC11_JJ
0.102
-1.405
3.371
7.981
4.542
32.909
-3.118
1.101
3.095
7.829
-13.757
34.132
1
21
FF_DG9DA10:DT9DC10_JJ
-0.13
-0.339
3.211
0.243
1.194
33.099
-0.792
0.269
3.196
2.094
-0.427
33.121
1
24
FF_DT12DG13:DT6DA7_JJ
0.36
3.294
-0.644
156.24
-77.934
-87.82
-1.673
0.13
0.38
39.336
78.86
-176.109
1
30
GG_DA6DA7:DT12DT13_KK
0.072
0.067
3.027
-0.636
5.958
33.899
-0.747
-0.213
2.993
10.12
1.081
34.409
1
31
GG_DA7DG8:DC11DT12_KK
0.133
-0.799
3.431
-2.748
3.256
33.154
-1.948
-0.703
3.319
5.677
4.791
33.419
1
34
GG_DA10DC11:DG8DT9_KK
0.823
-0.701
3.256
-1.643
-1.472
31.192
-1.024
-1.836
3.238
-2.732
3.052
31.268
1
35
GG_DC11DT12:DA7DG8_KK
0.799
-0.872
3.088
2.829
4.991
26.991
-2.965
-1.032
2.949
10.542
-5.975
27.583
1
25
GG_DG1DG2:DC17DC18_KK
0.865
-0.382
3.089
1.882
2.537
32.987
-1.074
-1.217
3.095
4.455
-3.305
33.134
1
26
GG_DG2DG3:DC16DC17_KK
-0.967
-0.273
3.502
-0.946
0.599
35.477
-0.542
1.438
3.521
0.983
1.551
35.494
1
27
GG_DG3DG4:DC15DC16_KK
-0.028
-0.541
3.193
-3.432
4.801
37.083
-1.447
-0.39
3.092
7.491
5.355
37.533
1
28
GG_DG4DG5:DC14DC15_KK
0.729
-0.676
3.234
5.638
8.223
32.892
-2.414
-0.366
3.061
14.123
-9.683
34.33
1
29
GG_DG5DA6:DT13DC14_KK
-0.088
0.208
3.073
2.464
8.334
34.242
-0.825
0.49
3.026
13.879
-4.104
35.296
1
32
GG_DG8DG9:DC10DC11_KK
0.06
-1.601
3.572
5.258
4.105
30.086
-3.865
0.977
3.293
7.789
-9.976
30.8
1
33
GG_DG9DA10:DT9DC10_KK
-0.228
-0.397
3.061
-1.717
0.178
36.073
-0.664
0.14
3.066
0.288
2.77
36.113
1
36
GG_DT12DG13:DT6DA7_KK
0.714
3.019
-0.212
148.427
-85.548
-129.434
-1.512
0.355
0.187
42.981
74.573
-176.294
1
42
HH_DA6DA7:DT12DT13_LL
-0.337
-0.185
3.197
2.03
-1.048
35.28
-0.154
0.847
3.177
-1.726
-3.346
35.351
1
43
HH_DA7DG8:DC11DT12_LL
0.463
-0.986
3.605
-0.827
-2.211
32.656
-1.325
-0.98
3.65
-3.927
1.469
32.739
1
46
HH_DA10DC11:DG8DT9_LL
0.647
-0.766
3.39
1.841
1.568
30.487
-1.773
-0.848
3.379
2.975
-3.494
30.58
1
47
HH_DC11DT12:DA7DG8_LL
0.76
-0.837
3.302
-2.414
3.631
29.047
-2.419
-2.009
3.104
7.187
4.779
29.365
1
37
HH_DG1DG2:DC17DC18_LL
0.793
-0.178
2.765
-4.944
-2.018
31.631
-0.022
-2.172
2.621
-3.669
8.99
32.067
1
38
HH_DG2DG3:DC16DC17_LL
-0.957
-0.51
3.178
-4.024
-1.216
37.428
-0.634
0.966
3.274
-1.888
6.246
37.655
1
39
HH_DG3DG4:DC15DC16_LL
0.019
-0.474
3.54
2.347
6.343
35.715
-1.709
0.321
3.403
10.229
-3.786
36.329
1
40
HH_DG4DG5:DC14DC15_LL
0.709
-0.222
3.042
2.102
9.032
33.049
-1.695
-0.896
2.921
15.501
-3.608
34.29
1
41
HH_DG5DA6:DT13DC14_LL
-0.192
0.171
3.312
0.481
10.648
34.093
-1.298
0.385
3.217
17.634
-0.797
35.673
1
44
HH_DG8DG9:DC10DC11_LL
-0.346
-1.271
3.585
3.295
0.939
33.085
-2.39
1.202
3.499
1.643
-5.767
33.257
1
45
HH_DG9DA10:DT9DC10_LL
0.079
-0.417
3.055
-3.706
-1.158
33.588
-0.542
-0.695
3.041
-1.996
6.386
33.805
The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures',
Nucleic Acids Res
.
31(17)
, 5108-21. Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures',
Nat Protoc
.
3(7)
, 1213-27.