A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 18-May-2022 number of released structures: 12082
Search for released structures

NDB ID: PR0123  PDB ID: 1SJ4 


Base Pair Morphology Parameters

CSV Format

Model NumberPair NumberPair NameShearStretchStaggerBucklePropellorOpening
115R_A116:U167_R-0.149-0.187-0.1331.576-6.7165.07
119R_A143:G162_R-0.0051.318-0.747-6.425-15.291-9.347
121R_A145:U160_R0.073-0.190.033-3.46-16.5515.74
15R_C103:G135_R0.188-0.128-1.39623.759-1.6630.854
16R_C104:G134_R0.425-0.074-0.69412.851-3.6455.344
19R_C107:G131_R0.437-0.082-0.3569.51-3.272.031
112R_C113:G170_R0.06-0.24-0.11412.259-22.961-4.031
113R_C114:G169_R0.514-0.2440.191-0.056-7.7771.673
114R_C115:G168_R-0.305-0.0640.051-1.451-6.228-5.853
117R_C118:G129_R0.09-0.1950.465-8.063-21.4362.061
118R_C119:G128_R-0.13-0.2360.82-12.944-12.896-7.893
11R_C121:G139_R-0.001-0.1780.21511.744-20.148-3.359
12R_C122:G138_R0.21-0.192-0.2676.198-8.8921.632
120R_C144:G161_R0.441-0.170.1925.933-17.8642.812
122R_C146:G159_R0.323-0.2090.0391.473-11.9012.003
123R_C147:G158_R0.228-0.2070.033-2.2350.070.108
13R_G101:U137_R-2.577-0.805-0.631-9.416-8.1430.787
14R_G102:C136_R-0.364-0.143-0.419-6.167-3.7977.299
17R_G105:C133_R-0.592-0.2010.4157.41-3.3895.937
18R_G106:C132_R-0.464-0.2110.0411.164-11.4245.819
110R_G111:C172_R-0.4190.0130.068-4.627-13.5794.423
116R_G117:C130_R-0.314-0.050.2640.239-14.4023.856
111R_U112:A171_R-0.146-0.0780.0048.935-11.8920.431
124R_U155:C156_R-6.6120.6430.338-14.562-4.5491.164

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.