A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 25-May-2022 number of released structures: 12098
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NDB ID: PR0126  PDB ID: 1SZ1 


Base Pair Morphology Parameters

CSV Format

Model NumberPair NumberPair NameShearStretchStaggerBucklePropellorOpening
122E_2MG10:C25_E-0.22-0.309-0.049-4.551-8.1071.117
117E_5MC40:G30_E-0.763-0.213-0.0494.813-14.547-1.757
18E_5MC49:G65_E-0.101-0.2330.041-0.748-7.209-2.192
113E_5MU54:1MA58_E3.85-1.70.0534.0194.07-95.675
15E_A5:U68_E0.086-0.2140.3234.501-19.0633.832
126E_A14:U8_E-4.125-1.9050.5325.27210.948-101.137
115E_A38:OMC32_E-6.408-2.0250.754-3.6591.304-0.656
121E_A44:M2G26_E0.4531.376-0.377-20.161-36.397-14.68
12E_C2:G71_E1.0150.3560.1891.015-15.74910.05
123E_C11:G24_E0.217-0.2360.186-6.733-18.5584.084
125E_C13:G22_E0.259-0.101-0.0815.818-2.3471.579
11E_G1:C72_E-0.220.5380.187.727-16.8212.475
13E_G3:C70_E0.085-0.210.4620.782-12.201-3.376
14E_G4:U69_E-2.227-0.4640.6679.67-6.910.25
127E_G15:C48_E0.1233.9120.1031.7590.483152.097
128E_G19:C56_E-0.166-0.2530.842-18.851-27.5420.084
119E_G42:C28_E-0.011-0.350.471-4.772-9.635-1.484
120E_G43:C27_E-0.191-0.3170.243-9.487-20.197-2.95
110E_G51:C63_E-0.305-0.160.042-4.589-13.2594.209
112E_G53:C61_E-0.346-0.153-0.183-10.751-6.551.837
116E_PSU39:A31_E-2.067-0.1430.3026.58-14.988-5.091
114E_PSU55:G18_E0.514-5.7310.30717.161.146-92.656
16E_U6:A67_E-0.379-0.2460.19-6.843-21.5997.724
17E_U7:A66_E-0.015-0.251-0.107-1.216-5.5492.506
124E_U12:A23_E-0.041-0.1170.427-9.568-3.854-2.71
118E_U41:A29_E-0.0550.0530.364-5.031-8.92412.126
19E_U50:A64_E-0.129-0.2490.119-3.467-5.873-2.349
111E_U52:A62_E-0.553-0.1580.08-0.96-6.8-0.48
150F_2MG10:C25_F-0.222-0.308-0.044-4.534-8.121.147
145F_5MC40:G30_F-0.764-0.215-0.0464.81-14.626-1.775
136F_5MC49:G65_F-0.1-0.2350.038-0.799-7.233-2.168
141F_5MU54:1MA58_F3.465-1.545-0.3790.0743.415-98.601
133F_A5:U68_F0.093-0.1980.2325.167-19.5393.952
154F_A14:U8_F-4.124-1.9020.5215.37510.912-101.106
143F_A38:OMC32_F-6.406-2.0280.754-3.6871.279-0.713
149F_A44:M2G26_F0.4511.374-0.379-20.124-36.383-14.688
130F_C2:G71_F0.8070.2020.1530.45-14.29910.224
151F_C11:G24_F0.218-0.2350.187-6.775-18.574.091
153F_C13:G22_F0.262-0.1-0.0735.678-2.281.568
129F_G1:C72_F-0.2690.2550.1137.936-16.9332.31
131F_G3:C70_F0.015-0.2270.360.425-13.448-4.138
132F_G4:U69_F-2.256-0.4810.57410.3-6.5370.123
155F_G15:C48_F0.1273.9140.1041.7910.555152.072
156F_G19:C56_F0.12-0.236-1.04216.509-22.705-1.008
147F_G42:C28_F-0.013-0.350.469-4.865-9.699-1.447
148F_G43:C27_F-0.193-0.3180.24-9.531-20.242-2.953
138F_G51:C63_F-0.307-0.160.038-4.541-13.2534.212
140F_G53:C61_F-0.345-0.153-0.186-10.77-6.6421.83
144F_PSU39:A31_F-2.068-0.1440.3026.598-15.011-5.143
142F_PSU55:G18_F0.517-5.7280.317.1041.454-92.655
134F_U6:A67_F-0.409-0.2490.103-6.494-21.7017.306
135F_U7:A66_F-0.1-0.333-0.09-2.152-5.1441.791
152F_U12:A23_F-0.04-0.1150.423-9.496-3.873-2.712
146F_U41:A29_F-0.0560.0530.367-5.064-8.95212.091
137F_U50:A64_F-0.127-0.2510.113-3.374-5.84-2.348
139F_U52:A62_F-0.554-0.1560.085-0.929-6.864-0.457

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.