1SZ1: Base Pair Morphology Step Parameters

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As of 18-May-2022 number of released structures: 12082

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NDB ID: PR0126 PDB ID: 1SZ1

Base Pair Morphology Step Parameters

CSV Format

Model Number	Step Number	Step Name	Shift	Slide	Rise	Tilt	Roll	Twist	X-Displacement	Y-Displacement	Helical Rise	Inclination	Tip	Helical Twist
1	21	EE_2MG10C11:G24C25_EE	-0.953	-1.609	3.143	-2.646	4.564	38.149	-2.973	1.136	2.995	6.942	4.025	38.499
1	16	EE_5MC40U41:A29G30_EE	0.779	-1.66	3.603	-2.088	4.997	41.0	-2.923	-1.342	3.345	7.097	2.965	41.341
1	8	EE_5MC49U50:A64G65_EE	-0.911	-2.097	3.21	-1.541	7.557	29.034	-5.461	1.47	2.636	14.747	3.007	30.02
1	13	EE_5MU54PSU55:G181MA58_EE	1.932	-2.295	3.376	8.68	4.372	45.871	-3.27	-1.67	3.447	5.536	-10.992	46.835
1	5	EE_A5U6:A67U68_EE	0.506	-1.689	3.379	2.052	7.491	29.236	-4.72	-0.564	2.895	14.52	-3.978	30.228
1	25	EE_A14G15:C48U8_EE	2.421	-3.451	3.314	0.96	7.199	-63.656	2.925	2.328	3.612	-6.802	0.907	-64.025
1	14	EE_A38PSU39:A31OMC32_EE	-0.241	-1.359	3.06	-6.784	11.037	47.896	-2.356	-0.164	2.712	13.314	8.183	49.518
1	20	EE_A442MG10:C25M2G26_EE	-2.882	-2.655	3.383	14.638	16.091	58.741	-3.19	3.353	1.967	15.826	-14.396	62.301
1	2	EE_C2G3:C70G71_EE	-0.758	-1.347	3.12	-2.333	3.572	20.236	-5.204	1.164	2.908	10.021	6.546	20.677
1	22	EE_C11U12:A23G24_EE	-0.278	-1.204	3.262	-1.203	7.516	32.324	-3.317	0.294	2.924	13.271	2.125	33.185
1	24	EE_C13A14:U8G22_EE	-2.383	-0.293	3.292	-0.322	-5.273	57.853	-0.019	2.438	3.317	-5.439	0.332	58.073
1	1	EE_G1C2:G71C72_EE	0.649	-2.161	3.11	-0.791	-0.026	41.001	-3.081	-1.009	3.099	-0.037	1.13	41.008
1	3	EE_G3G4:U69C70_EE	0.236	-1.832	2.821	-5.749	5.429	23.223	-5.645	-1.965	2.219	13.012	13.779	24.515
1	4	EE_G4A5:U68U69_EE	-0.208	-1.43	3.287	1.38	3.86	42.987	-2.316	0.416	3.145	5.253	-1.878	43.172
1	18	EE_G42G43:C27C28_EE	-0.08	-1.516	3.278	1.42	5.731	36.185	-3.17	0.315	3.006	9.151	-2.268	36.648
1	19	EE_G43A44:M2G26C27_EE	-0.676	-1.095	3.409	5.63	5.955	38.434	-2.342	1.679	3.087	8.922	-8.435	39.266
1	10	EE_G51U52:A62C63_EE	0.257	-1.309	3.184	-1.069	3.502	28.747	-3.349	-0.738	2.995	7.018	2.142	28.974
1	12	EE_G535MU54:1MA58C61_EE	-1.767	-2.451	3.094	-0.333	-5.802	89.131	-1.629	1.251	3.22	-4.13	0.237	89.281
1	15	EE_PSU395MC40:G30A31_EE	0.004	-1.408	3.09	-0.616	7.08	38.725	-2.853	-0.072	2.799	10.568	0.92	39.347
1	6	EE_U6U7:A66A67_EE	-0.195	-1.16	3.129	1.965	10.4	34.068	-3.264	0.577	2.657	17.241	-3.258	35.627
1	7	EE_U75MC49:G65A66_EE	-0.469	-2.057	3.296	0.368	4.415	33.752	-4.194	0.858	3.005	7.563	-0.63	34.033
1	23	EE_U12C13:G22A23_EE	1.734	-2.071	2.84	5.628	0.91	27.198	-4.513	-2.379	3.06	1.909	-11.803	27.778
1	17	EE_U41G42:C28A29_EE	-0.302	-1.778	3.024	-0.097	7.723	26.016	-5.445	0.624	2.406	16.693	0.21	27.119
1	9	EE_U50G51:C63A64_EE	0.27	-1.43	3.325	1.115	5.078	31.533	-3.503	-0.291	3.071	9.266	-2.034	31.948
1	11	EE_U52G53:C61A62_EE	0.975	-1.975	3.386	1.989	7.603	33.714	-4.47	-1.339	2.935	12.893	-3.372	34.592
1	46	FF_2MG10C11:G24C25_FF	-0.951	-1.609	3.145	-2.606	4.5	38.193	-2.964	1.137	2.999	6.838	3.961	38.532
1	41	FF_5MC40U41:A29G30_FF	0.778	-1.659	3.603	-2.075	5.003	40.999	-2.923	-1.34	3.345	7.105	2.947	41.34
1	33	FF_5MC49U50:A64G65_FF	-0.912	-2.094	3.204	-1.504	7.544	29.03	-5.453	1.48	2.632	14.726	2.935	30.01
1	38	FF_5MU54PSU55:G181MA58_FF	1.82	-2.096	3.147	6.864	4.837	44.28	-3.16	-1.777	3.147	6.349	-9.01	45.029
1	30	FF_A5U6:A67U68_FF	0.493	-1.682	3.387	1.905	7.826	28.936	-4.816	-0.57	2.869	15.292	-3.723	30.013
1	50	FF_A14G15:C48U8_FF	2.416	-3.456	3.316	0.964	7.13	-63.676	2.933	2.323	3.611	-6.735	0.911	-64.039
1	39	FF_A38PSU39:A31OMC32_FF	-0.238	-1.362	3.06	-6.758	10.979	47.844	-2.36	-0.167	2.712	13.259	8.161	49.452
1	45	FF_A442MG10:C25M2G26_FF	-2.881	-2.658	3.383	14.591	16.055	58.735	-3.193	3.352	1.97	15.794	-14.354	62.277
1	27	FF_C2G3:C70G71_FF	-0.811	-1.336	3.11	-1.721	3.236	20.871	-4.882	1.541	2.928	8.845	4.704	21.187
1	47	FF_C11U12:A23G24_FF	-0.278	-1.206	3.254	-1.153	7.554	32.33	-3.321	0.301	2.914	13.335	2.036	33.197
1	49	FF_C13A14:U8G22_FF	-2.385	-0.294	3.286	-0.338	-5.232	57.852	-0.023	2.439	3.312	-5.396	0.349	58.069
1	26	FF_G1C2:G71C72_FF	0.66	-2.173	3.168	-0.976	0.344	41.185	-3.124	-1.039	3.135	0.489	1.387	41.197
1	28	FF_G3G4:U69C70_FF	0.16	-1.83	2.768	-5.962	6.049	22.328	-5.942	-1.885	2.094	14.944	14.729	23.869
1	29	FF_G4A5:U68U69_FF	-0.195	-1.394	3.294	1.384	3.685	43.117	-2.245	0.398	3.163	5.002	-1.878	43.287
1	43	FF_G42G43:C27C28_FF	-0.083	-1.514	3.278	1.429	5.706	36.164	-3.168	0.323	3.007	9.118	-2.283	36.623
1	44	FF_G43A44:M2G26C27_FF	-0.675	-1.094	3.405	5.578	5.973	38.44	-2.341	1.671	3.084	8.949	-8.357	39.267
1	35	FF_G51U52:A62C63_FF	0.257	-1.307	3.185	-1.09	3.431	28.765	-3.331	-0.743	3.001	6.872	2.182	28.985
1	37	FF_G535MU54:1MA58C61_FF	-1.639	-2.357	3.356	0.83	-4.272	90.657	-1.568	1.169	3.429	-3.002	-0.583	90.739
1	40	FF_PSU395MC40:G30A31_FF	0.006	-1.41	3.091	-0.612	7.124	38.757	-2.858	-0.075	2.798	10.624	0.912	39.387
1	31	FF_U6U7:A66A67_FF	-0.206	-1.222	3.183	1.304	10.553	33.993	-3.414	0.512	2.686	17.526	-2.166	35.571
1	32	FF_U75MC49:G65A66_FF	-0.416	-2.043	3.28	0.701	4.11	34.097	-4.08	0.811	3.012	6.977	-1.191	34.344
1	48	FF_U12C13:G22A23_FF	1.732	-2.072	2.849	5.591	0.916	27.199	-4.519	-2.379	3.066	1.922	-11.727	27.772
1	42	FF_U41G42:C28A29_FF	-0.303	-1.777	3.025	-0.105	7.768	26.025	-5.446	0.623	2.404	16.78	0.227	27.141
1	34	FF_U50G51:C63A64_FF	0.27	-1.429	3.328	1.079	5.155	31.515	-3.518	-0.298	3.069	9.408	-1.97	31.941
1	36	FF_U52G53:C61A62_FF	0.973	-1.974	3.388	2.026	7.714	33.714	-4.481	-1.33	2.93	13.074	-3.434	34.618

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.