A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 18-May-2022 number of released structures: 12082
Search for released structures

NDB ID: UR0037  PDB ID: 1T0D 


Base Pair Morphology Parameters

CSV Format

Model NumberPair NumberPair NameShearStretchStaggerBucklePropellorOpening
111A_C12:G24_B0.8610.028-0.14812.005-13.8512.85
113A_C14:G22_B0.702-0.335-0.093-0.593-16.9023.311
11A_G1:C34_B-0.045-0.116-0.246-3.12-7.3550.889
12A_G2:C33_B-0.291-0.309-0.014-9.648-10.9331.009
14A_G4:C31_B-0.178-0.2280.0280.038-13.0411.153
15A_G5:C30_B-0.3-0.3420.041-6.605-16.349-1.822
17A_G7:C28_B-0.419-0.2610.3-5.056-11.992-1.985
19A_G10:C26_B0.07-0.216-0.1270.945-7.8011.838
112A_G13:C23_B-0.154-0.201-0.314-8.124-10.8133.738
115A_G16:C20_B-0.288-0.1170.286-1.929-14.8072.549
18A_MTU8:A27_B0.7661.281-0.2257.2481.48-13.946
13A_U3:A32_B0.091-0.1370.213-2.857-7.380.786
16A_U6:A29_B0.16-0.140.455-10.703-17.4967.581
110A_U11:U25_B2.253-1.8190.006-1.499-9.61311.429
114A_U15:A21_B0.147-0.3130.195-2.812-5.9173.012
125C_C12:G24_D0.199-0.176-0.1343.229-9.4045.682
127C_C14:G22_D0.24-0.1320.223-1.968-10.4482.842
116C_G1:C34_D-0.167-0.242-0.0290.357-10.228-3.148
117C_G2:C33_D-0.36-0.207-0.059-12.134-16.7694.179
119C_G4:C31_D-0.222-0.224-0.013-4.798-10.427-0.184
120C_G5:C30_D-0.195-0.13-0.082-11.353-18.2984.371
122C_G7:C28_D-0.216-0.2390.558-1.114-10.805-0.493
123C_G10:C26_D-0.242-0.257-0.12-5.028-4.582.482
126C_G13:C23_D-0.135-0.175-0.006-3.398-11.1210.118
129C_G16:C20_D-0.225-0.0990.047-17.222-20.4642.848
118C_U3:A32_D-0.177-0.044-0.064-4.571-10.59-3.998
121C_U6:A29_D-0.001-0.1190.17-7.596-15.5172.996
124C_U11:U25_D2.067-1.723-0.056-4.858-14.3092.81
128C_U15:A21_D0.152-0.305-0.209-0.775-9.0060.968

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.