1T0D: Base Pair Morphology Parameters

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As of 18-May-2022 number of released structures: 12082

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NDB ID: UR0037 PDB ID: 1T0D

Base Pair Morphology Parameters

CSV Format

Model Number	Pair Number	Pair Name	Shear	Stretch	Stagger	Buckle	Propellor	Opening
1	11	A_C12:G24_B	0.861	0.028	-0.148	12.005	-13.85	12.85
1	13	A_C14:G22_B	0.702	-0.335	-0.093	-0.593	-16.902	3.311
1	1	A_G1:C34_B	-0.045	-0.116	-0.246	-3.12	-7.355	0.889
1	2	A_G2:C33_B	-0.291	-0.309	-0.014	-9.648	-10.933	1.009
1	4	A_G4:C31_B	-0.178	-0.228	0.028	0.038	-13.041	1.153
1	5	A_G5:C30_B	-0.3	-0.342	0.041	-6.605	-16.349	-1.822
1	7	A_G7:C28_B	-0.419	-0.261	0.3	-5.056	-11.992	-1.985
1	9	A_G10:C26_B	0.07	-0.216	-0.127	0.945	-7.801	1.838
1	12	A_G13:C23_B	-0.154	-0.201	-0.314	-8.124	-10.813	3.738
1	15	A_G16:C20_B	-0.288	-0.117	0.286	-1.929	-14.807	2.549
1	8	A_MTU8:A27_B	0.766	1.281	-0.225	7.248	1.48	-13.946
1	3	A_U3:A32_B	0.091	-0.137	0.213	-2.857	-7.38	0.786
1	6	A_U6:A29_B	0.16	-0.14	0.455	-10.703	-17.496	7.581
1	10	A_U11:U25_B	2.253	-1.819	0.006	-1.499	-9.613	11.429
1	14	A_U15:A21_B	0.147	-0.313	0.195	-2.812	-5.917	3.012
1	25	C_C12:G24_D	0.199	-0.176	-0.134	3.229	-9.404	5.682
1	27	C_C14:G22_D	0.24	-0.132	0.223	-1.968	-10.448	2.842
1	16	C_G1:C34_D	-0.167	-0.242	-0.029	0.357	-10.228	-3.148
1	17	C_G2:C33_D	-0.36	-0.207	-0.059	-12.134	-16.769	4.179
1	19	C_G4:C31_D	-0.222	-0.224	-0.013	-4.798	-10.427	-0.184
1	20	C_G5:C30_D	-0.195	-0.13	-0.082	-11.353	-18.298	4.371
1	22	C_G7:C28_D	-0.216	-0.239	0.558	-1.114	-10.805	-0.493
1	23	C_G10:C26_D	-0.242	-0.257	-0.12	-5.028	-4.58	2.482
1	26	C_G13:C23_D	-0.135	-0.175	-0.006	-3.398	-11.121	0.118
1	29	C_G16:C20_D	-0.225	-0.099	0.047	-17.222	-20.464	2.848
1	18	C_U3:A32_D	-0.177	-0.044	-0.064	-4.571	-10.59	-3.998
1	21	C_U6:A29_D	-0.001	-0.119	0.17	-7.596	-15.517	2.996
1	24	C_U11:U25_D	2.067	-1.723	-0.056	-4.858	-14.309	2.81
1	28	C_U15:A21_D	0.152	-0.305	-0.209	-0.775	-9.006	0.968

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.