A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 19-Jan-2022 number of released structures: 11891
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NDB ID: PR0125  PDB ID: 1T0K 


Base Pair Morphology Parameters

CSV Format

Model NumberPair NumberPair NameShearStretchStaggerBucklePropellorOpening
12C_A7:U63_D0.1140.0760.14620.454-2.1263.423
13C_C8:G62_D0.486-0.208-1.11219.073-22.8863.756
14C_C9:G61_D-0.353-0.003-0.292-4.887-13.246.735
11C_G6:C64_D0.352-0.0890.042-3.026-20.656-0.31
15C_G11:A59_D7.501-4.9620.35818.582.603-38.787
17D_A51:U16_C-0.07-0.240.6514.798-22.507-15.001
111D_A55:G56_D2.6696.141-0.18719.527-61.648139.053
18D_C52:G15_C-0.542-0.2480.5498.004-27.337-13.949
110D_C54:G13_C-0.563-0.1270.16213.637-5.141-1.407
16D_G50:C17_C-0.306-0.3071.51313.83614.8324.772
19D_G53:U14_C-2.158-0.2450.380.191-14.871-1.719

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.