A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 19-Jan-2022 number of released structures: 11891
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NDB ID: PR0125  PDB ID: 1T0K 


Base Pair Morphology Step Parameters

CSV Format

Model NumberStep NumberStep NameShiftSlideRiseTiltRollTwistX-DisplacementY-DisplacementHelical RiseInclinationTipHelical Twist
12CC_A7C8:G62U63_DD0.274-1.2193.1169.85812.91533.863-3.430.7432.48820.755-15.84337.456
13CC_C8C9:G61G62_DD-0.136-1.6223.986-3.99513.16827.107-6.053-0.6362.89726.077.90930.341
14CC_C9G11:A59G61_DD-2.197-0.1716.5818.84915.80297.069-0.6291.7416.3510.476-5.86798.325
11CC_G6A7:U63C64_DD-0.049-0.912.8-4.12-1.90233.658-1.295-0.4872.832-3.2677.07633.953
16DD_A51C52:G15U16_CC0.253-1.9083.424-1.70211.50228.101-5.803-0.8022.45222.5073.33130.366
17DD_C52G53:U14G15_CC1.096-1.8183.349-0.5647.05331.924-4.407-2.0422.87312.6311.01132.679
19DD_C54A55:G56G13_DC0.231-2.9474.89-2.51241.113-28.403-2.669-0.1025.255-56.755-3.468-49.68
15DD_G50A51:U16C17_CC-1.005-0.9173.7417.98311.07638.174-2.6672.423.10516.311-11.75740.456
18DD_G53C54:G13U14_CC-0.066-1.8113.001-1.2140.55332.96-3.275-0.0722.9710.9752.13932.987

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.