A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 18-May-2022 number of released structures: 12082
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NDB ID: PD0542  PDB ID: 1T39 


Base Pair Morphology Parameters

CSV Format

Model NumberPair NumberPair NameShearStretchStaggerBucklePropellorOpening
14C_DA4:DT23_D0.112-0.0580.439-5.466-16.111-0.262
18C_DA10:DT17_D-0.071-0.0870.0135.247-6.1572.414
111C_DA13:DT14_D0.173-0.009-0.17729.582-25.0922.076
12C_DC2:DG25_D0.4820.037-0.27228.224-17.3121.498
13C_DC3:DG24_D-0.14-0.069-0.295.23-15.627-0.073
16C_DC8:DG19_D0.223-0.0210.039-11.2839.225-4.587
11C_DG1:DC26_D0.036-0.454-1.652-11.141-9.116-0.55
19C_DG11:DC16_D0.0270.047-0.2744.8324.886-1.441
15C_DT5:DC21_D-1.222-1.573-1.03812.17826.334-25.644
17C_DT9:DA18_D-0.0670.003-0.3150.332-14.4714.214
110C_DT12:DA15_D-0.005-0.060.392.7190.5990.083
114E_DA4:DT23_F0.124-0.0380.2414.215-14.204-0.46
119E_DA10:DT17_F0.192-0.021-0.3039.661-12.195-1.573
122E_DA13:DT14_F-0.009-0.197-0.47216.888-12.81112.133
112E_DC2:DG25_F0.142-0.102-0.8377.082-11.7993.112
113E_DC3:DG24_F-0.047-0.265-1.34210.663-5.511-0.881
117E_DC8:DG19_F-0.007-0.040.537-14.6812.835-3.27
116E_DG6:DC21_F-0.216-0.0250.0162.83411.843-1.818
120E_DG11:DC16_F-0.1570.102-0.668-18.4030.6810.851
115E_DT5:DA22_F-0.135-0.0351.047-0.9835.352-6.852
118E_DT9:DA18_F0.04-0.066-0.520.008-6.6430.28
121E_DT12:DA15_F0.062-0.239-0.7141.676-10.8289.055

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.