1T39: Base Pair Morphology Parameters

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NDB ID: PD0542 PDB ID: 1T39

Base Pair Morphology Parameters

CSV Format

Model Number	Pair Number	Pair Name	Shear	Stretch	Stagger	Buckle	Propellor	Opening
1	4	C_DA4:DT23_D	0.112	-0.058	0.439	-5.466	-16.111	-0.262
1	8	C_DA10:DT17_D	-0.071	-0.087	0.013	5.247	-6.157	2.414
1	11	C_DA13:DT14_D	0.173	-0.009	-0.177	29.582	-25.092	2.076
1	2	C_DC2:DG25_D	0.482	0.037	-0.272	28.224	-17.312	1.498
1	3	C_DC3:DG24_D	-0.14	-0.069	-0.29	5.23	-15.627	-0.073
1	6	C_DC8:DG19_D	0.223	-0.021	0.039	-11.283	9.225	-4.587
1	1	C_DG1:DC26_D	0.036	-0.454	-1.652	-11.141	-9.116	-0.55
1	9	C_DG11:DC16_D	0.027	0.047	-0.274	4.832	4.886	-1.441
1	5	C_DT5:DC21_D	-1.222	-1.573	-1.038	12.178	26.334	-25.644
1	7	C_DT9:DA18_D	-0.067	0.003	-0.315	0.332	-14.471	4.214
1	10	C_DT12:DA15_D	-0.005	-0.06	0.39	2.719	0.599	0.083
1	14	E_DA4:DT23_F	0.124	-0.038	0.241	4.215	-14.204	-0.46
1	19	E_DA10:DT17_F	0.192	-0.021	-0.303	9.661	-12.195	-1.573
1	22	E_DA13:DT14_F	-0.009	-0.197	-0.472	16.888	-12.811	12.133
1	12	E_DC2:DG25_F	0.142	-0.102	-0.837	7.082	-11.799	3.112
1	13	E_DC3:DG24_F	-0.047	-0.265	-1.342	10.663	-5.511	-0.881
1	17	E_DC8:DG19_F	-0.007	-0.04	0.537	-14.68	12.835	-3.27
1	16	E_DG6:DC21_F	-0.216	-0.025	0.016	2.834	11.843	-1.818
1	20	E_DG11:DC16_F	-0.157	0.102	-0.668	-18.403	0.681	0.851
1	15	E_DT5:DA22_F	-0.135	-0.035	1.047	-0.983	5.352	-6.852
1	18	E_DT9:DA18_F	0.04	-0.066	-0.52	0.008	-6.643	0.28
1	21	E_DT12:DA15_F	0.062	-0.239	-0.714	1.676	-10.828	9.055

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.