A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 18-May-2022 number of released structures: 12082
Search for released structures

NDB ID: PD0542  PDB ID: 1T39 


Base Pair Morphology Step Parameters

CSV Format

Model NumberStep NumberStep NameShiftSlideRiseTiltRollTwistX-DisplacementY-DisplacementHelical RiseInclinationTipHelical Twist
14CC_DA4DT5:DC21DT23_DD0.416-0.5784.488-12.108-14.17748.4360.672-1.6174.28-16.58414.16451.697
17CC_DA10DG11:DC16DT17_DD-0.411-0.8693.581-0.647-2.20331.331-1.1480.6253.639-4.0721.19531.413
12CC_DC2DC3:DG24DG25_DD0.5310.5013.7974.3789.56729.789-1.21-0.0023.8117.92-8.20231.552
13CC_DC3DA4:DT23DG24_DD0.2220.4073.396-3.97915.32239.308-1.106-0.7413.2921.7375.64542.259
15CC_DC8DT9:DA18DG19_DD0.388-1.1192.7225.7275.20233.017-2.6030.0872.5519.0-9.90733.887
11CC_DG1DC2:DG25DC26_DD-0.3951.3622.411-6.927-4.66234.9312.693-0.0762.251-7.63211.33935.885
18CC_DG11DT12:DA15DC16_DD0.421-0.3853.3260.258.74333.479-2.003-0.6693.13314.864-0.42434.571
16CC_DT9DA10:DT17DA18_DD-0.2842.123.303-5.173-3.25336.5553.768-0.2393.119-5.1428.17737.045
19CC_DT12DA13:DT14DA15_DD0.0090.5522.80210.8350.86638.7240.7191.0492.7191.275-15.96140.164
112EE_DA4DT5:DA22DT23_FF0.471-1.3133.326-0.7749.18630.446-4.012-0.9952.80817.0091.43331.78
116EE_DA10DG11:DC16DT17_FF-0.05-1.7754.058-5.7314.60623.147-7.497-1.3932.4732.09912.59127.903
110EE_DC2DC3:DG24DG25_FF0.690.3313.32910.83110.60425.432-1.7921.143.2421.792-22.2629.542
111EE_DC3DA4:DT23DG24_FF0.750.7753.276-7.126.47440.2520.402-1.8273.1869.24810.17141.34
114EE_DC8DT9:DA18DG19_FF0.806-0.752.58214.024.99633.977-1.7360.2862.5758.085-22.6937.006
117EE_DG11DT12:DA15DC16_FF0.4230.9322.9975.834-6.8838.1582.134-0.0012.825-10.348-8.77539.171
113EE_DT5DG6:DC21DA22_FF0.8122.1153.2747.2650.54336.8233.216-0.2853.3980.85-11.36437.513
115EE_DT9DA10:DT17DA18_FF-0.5881.7063.001-4.0377.99436.4681.6250.3963.33212.5426.33337.516
118EE_DT12DA13:DT14DA15_FF0.4220.4343.1993.3729.92833.911-0.751-0.1953.22116.537-5.61735.449

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.