1T39: Base Pair Morphology Step Parameters

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NDB ID: PD0542 PDB ID: 1T39

Base Pair Morphology Step Parameters

CSV Format

Model Number	Step Number	Step Name	Shift	Slide	Rise	Tilt	Roll	Twist	X-Displacement	Y-Displacement	Helical Rise	Inclination	Tip	Helical Twist
1	4	CC_DA4DT5:DC21DT23_DD	0.416	-0.578	4.488	-12.108	-14.177	48.436	0.672	-1.617	4.28	-16.584	14.164	51.697
1	7	CC_DA10DG11:DC16DT17_DD	-0.411	-0.869	3.581	-0.647	-2.203	31.331	-1.148	0.625	3.639	-4.072	1.195	31.413
1	2	CC_DC2DC3:DG24DG25_DD	0.531	0.501	3.797	4.378	9.567	29.789	-1.21	-0.002	3.81	17.92	-8.202	31.552
1	3	CC_DC3DA4:DT23DG24_DD	0.222	0.407	3.396	-3.979	15.322	39.308	-1.106	-0.741	3.29	21.737	5.645	42.259
1	5	CC_DC8DT9:DA18DG19_DD	0.388	-1.119	2.722	5.727	5.202	33.017	-2.603	0.087	2.551	9.0	-9.907	33.887
1	1	CC_DG1DC2:DG25DC26_DD	-0.395	1.362	2.411	-6.927	-4.662	34.931	2.693	-0.076	2.251	-7.632	11.339	35.885
1	8	CC_DG11DT12:DA15DC16_DD	0.421	-0.385	3.326	0.25	8.743	33.479	-2.003	-0.669	3.133	14.864	-0.424	34.571
1	6	CC_DT9DA10:DT17DA18_DD	-0.284	2.12	3.303	-5.173	-3.253	36.555	3.768	-0.239	3.119	-5.142	8.177	37.045
1	9	CC_DT12DA13:DT14DA15_DD	0.009	0.552	2.802	10.835	0.866	38.724	0.719	1.049	2.719	1.275	-15.961	40.164
1	12	EE_DA4DT5:DA22DT23_FF	0.471	-1.313	3.326	-0.774	9.186	30.446	-4.012	-0.995	2.808	17.009	1.433	31.78
1	16	EE_DA10DG11:DC16DT17_FF	-0.05	-1.775	4.058	-5.73	14.606	23.147	-7.497	-1.393	2.47	32.099	12.591	27.903
1	10	EE_DC2DC3:DG24DG25_FF	0.69	0.331	3.329	10.831	10.604	25.432	-1.792	1.14	3.24	21.792	-22.26	29.542
1	11	EE_DC3DA4:DT23DG24_FF	0.75	0.775	3.276	-7.12	6.474	40.252	0.402	-1.827	3.186	9.248	10.171	41.34
1	14	EE_DC8DT9:DA18DG19_FF	0.806	-0.75	2.582	14.02	4.996	33.977	-1.736	0.286	2.575	8.085	-22.69	37.006
1	17	EE_DG11DT12:DA15DC16_FF	0.423	0.932	2.997	5.834	-6.88	38.158	2.134	-0.001	2.825	-10.348	-8.775	39.171
1	13	EE_DT5DG6:DC21DA22_FF	0.812	2.115	3.274	7.265	0.543	36.823	3.216	-0.285	3.398	0.85	-11.364	37.513
1	15	EE_DT9DA10:DT17DA18_FF	-0.588	1.706	3.001	-4.037	7.994	36.468	1.625	0.396	3.332	12.542	6.333	37.516
1	18	EE_DT12DA13:DT14DA15_FF	0.422	0.434	3.199	3.372	9.928	33.911	-0.751	-0.195	3.221	16.537	-5.617	35.449

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.