1T9I: Base Pair Morphology Parameters

A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 22-Jun-2022 number of released structures: 12128

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NDB ID: PD0547 PDB ID: 1T9I

Base Pair Morphology Parameters

CSV Format

Model Number	Pair Number	Pair Name	Shear	Stretch	Stagger	Buckle	Propellor	Opening
1	3	C_DA503:DT572_D	0.002	-0.13	-0.159	1.528	-12.135	3.151
1	4	C_DA504:DT571_D	-0.06	-0.074	0.134	7.484	-10.534	1.939
1	5	C_DA505:DT570_D	-0.244	-0.006	0.18	9.931	-12.399	3.954
1	6	C_DA506:DT569_D	-0.049	0.043	0.155	7.429	-12.377	8.189
1	14	C_DA514:DT561_D	0.228	-0.111	0.303	-5.817	-15.325	-2.227
1	16	C_DA516:DT559_D	0.073	-0.002	-0.072	-4.474	1.072	-3.171
1	18	C_DA518:DT557_D	-0.199	-0.006	-0.051	-4.433	-12.307	3.121
1	2	C_DC502:DG573_D	-0.35	-0.017	-0.045	-2.203	-5.511	-0.002
1	7	C_DC507:DG568_D	0.211	-0.197	-0.029	12.761	-19.012	4.99
1	10	C_DC510:DG565_D	0.015	-0.128	0.213	-5.384	-9.232	0.563
1	17	C_DC517:DG558_D	0.037	-0.024	-0.067	6.686	-9.484	-4.786
1	23	C_DC523:DG552_D	0.781	-0.102	-0.246	10.948	-4.279	5.762
1	1	C_DG501:DC574_D	-0.282	-0.092	-0.215	-10.575	-9.824	-1.99
1	8	C_DG508:DC567_D	-0.313	-0.164	0.021	-13.21	-18.324	-1.188
1	11	C_DG511:DC564_D	0.049	-0.156	0.439	5.591	-13.192	-2.073
1	13	C_DG513:DC562_D	-0.098	-0.116	0.49	-0.317	-21.534	1.338
1	15	C_DG515:DC560_D	-0.195	-0.2	-0.079	-8.188	-22.275	0.706
1	19	C_DG519:DC556_D	-0.482	-0.053	-0.179	-7.512	-12.85	4.525
1	24	C_DG524:DC551_D	0.352	-0.133	0.594	23.419	-17.157	-3.238
1	9	C_DT509:DA566_D	-0.241	-0.283	0.128	-7.214	-0.585	0.447
1	12	C_DT512:DA563_D	-0.11	-0.199	0.429	3.466	-20.548	0.968
1	20	C_DT520:DA555_D	-0.005	-0.076	0.035	-5.322	-13.294	4.023
1	21	C_DT521:DA554_D	-0.28	-0.083	0.291	-7.092	-9.552	3.774
1	22	C_DT522:DA553_D	-0.198	-0.072	-0.02	-1.529	-14.154	-0.91

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.