A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 22-Jun-2022 number of released structures: 12128
Search for released structures

NDB ID: PD0547  PDB ID: 1T9I 


Base Pair Morphology Parameters

CSV Format

Model NumberPair NumberPair NameShearStretchStaggerBucklePropellorOpening
13C_DA503:DT572_D0.002-0.13-0.1591.528-12.1353.151
14C_DA504:DT571_D-0.06-0.0740.1347.484-10.5341.939
15C_DA505:DT570_D-0.244-0.0060.189.931-12.3993.954
16C_DA506:DT569_D-0.0490.0430.1557.429-12.3778.189
114C_DA514:DT561_D0.228-0.1110.303-5.817-15.325-2.227
116C_DA516:DT559_D0.073-0.002-0.072-4.4741.072-3.171
118C_DA518:DT557_D-0.199-0.006-0.051-4.433-12.3073.121
12C_DC502:DG573_D-0.35-0.017-0.045-2.203-5.511-0.002
17C_DC507:DG568_D0.211-0.197-0.02912.761-19.0124.99
110C_DC510:DG565_D0.015-0.1280.213-5.384-9.2320.563
117C_DC517:DG558_D0.037-0.024-0.0676.686-9.484-4.786
123C_DC523:DG552_D0.781-0.102-0.24610.948-4.2795.762
11C_DG501:DC574_D-0.282-0.092-0.215-10.575-9.824-1.99
18C_DG508:DC567_D-0.313-0.1640.021-13.21-18.324-1.188
111C_DG511:DC564_D0.049-0.1560.4395.591-13.192-2.073
113C_DG513:DC562_D-0.098-0.1160.49-0.317-21.5341.338
115C_DG515:DC560_D-0.195-0.2-0.079-8.188-22.2750.706
119C_DG519:DC556_D-0.482-0.053-0.179-7.512-12.854.525
124C_DG524:DC551_D0.352-0.1330.59423.419-17.157-3.238
19C_DT509:DA566_D-0.241-0.2830.128-7.214-0.5850.447
112C_DT512:DA563_D-0.11-0.1990.4293.466-20.5480.968
120C_DT520:DA555_D-0.005-0.0760.035-5.322-13.2944.023
121C_DT521:DA554_D-0.28-0.0830.291-7.092-9.5523.774
122C_DT522:DA553_D-0.198-0.072-0.02-1.529-14.154-0.91

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.