1T9I: Base Pair Morphology Step Parameters

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As of 22-Jun-2022 number of released structures: 12128

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NDB ID: PD0547 PDB ID: 1T9I

Base Pair Morphology Step Parameters

CSV Format

Model Number	Step Number	Step Name	Shift	Slide	Rise	Tilt	Roll	Twist	X-Displacement	Y-Displacement	Helical Rise	Inclination	Tip	Helical Twist
1	3	CC_DA503DA504:DT571DT572_DD	0.632	-0.69	3.1	-0.742	-0.361	29.965	-1.263	-1.367	3.091	-0.698	1.435	29.976
1	4	CC_DA504DA505:DT570DT571_DD	0.299	-0.698	3.161	0.232	-3.352	34.201	-0.67	-0.471	3.215	-5.683	-0.394	34.36
1	5	CC_DA505DA506:DT569DT570_DD	0.47	-0.9	3.417	-0.674	-3.189	33.416	-1.006	-0.93	3.475	-5.53	1.169	33.57
1	6	CC_DA506DC507:DG568DT569_DD	0.42	-0.844	3.102	-0.446	4.146	33.032	-2.117	-0.802	2.971	7.256	0.78	33.287
1	14	CC_DA514DG515:DC560DT561_DD	-0.188	-0.082	3.383	2.998	8.626	34.659	-1.411	0.75	3.243	14.177	-4.928	35.806
1	16	CC_DA516DC517:DG558DT559_DD	0.675	-0.646	3.195	0.463	-3.532	24.726	-0.45	-1.425	3.266	-8.193	-1.073	24.977
1	18	CC_DA518DG519:DC556DT557_DD	-0.139	-1.023	3.496	1.72	9.512	27.665	-4.12	0.654	2.974	19.165	-3.465	29.274
1	2	CC_DC502DA503:DT572DG573_DD	-0.645	0.346	3.309	1.582	8.228	35.149	-0.629	1.27	3.274	13.391	-2.574	36.103
1	7	CC_DC507DG508:DC567DG568_DD	-0.076	-1.422	3.727	0.082	13.301	33.739	-4.278	0.135	2.974	21.89	-0.135	36.196
1	10	CC_DC510DG511:DC564DG565_DD	0.336	-0.043	3.12	-1.262	2.884	34.291	-0.499	-0.755	3.092	4.878	2.135	34.431
1	17	CC_DC517DA518:DT557DG558_DD	0.428	-1.052	3.516	2.99	10.762	34.455	-3.264	-0.253	3.086	17.604	-4.891	36.168
1	23	CC_DC523DG524:DC551DG552_DD	-1.089	1.182	3.118	-6.345	-0.956	35.519	2.041	0.88	3.227	-1.551	10.298	36.075
1	1	CC_DG501DC502:DG573DC574_DD	0.791	0.541	3.118	-1.229	-1.87	34.465	1.185	-1.512	3.056	-3.152	2.071	34.536
1	8	CC_DG508DT509:DA566DC567_DD	-0.913	-0.966	3.304	-1.714	-3.877	27.706	-1.044	1.464	3.453	-8.036	3.553	28.022
1	11	CC_DG511DT512:DA563DC564_DD	-0.421	-0.924	3.4	-2.251	-9.246	26.98	0.423	0.294	3.539	-19.08	4.644	28.58
1	13	CC_DG513DA514:DT561DC562_DD	0.082	-0.473	3.518	2.108	-8.209	30.053	0.832	0.287	3.519	-15.449	-3.967	31.199
1	15	CC_DG515DA516:DT559DC560_DD	1.129	0.535	3.342	1.207	-7.6	35.228	1.955	-1.652	3.197	-12.375	-1.965	36.033
1	19	CC_DG519DT520:DA555DC556_DD	0.192	-0.604	3.19	0.462	-0.217	35.95	-0.948	-0.246	3.196	-0.352	-0.749	35.954
1	9	CC_DT509DC510:DG565DA566_DD	-1.602	0.444	3.302	-4.194	-3.338	35.723	1.203	1.974	3.408	-5.403	6.789	36.11
1	12	CC_DT512DG513:DC562DA563_DD	0.039	2.699	3.81	-0.767	-13.888	55.439	3.65	-0.086	3.107	-14.672	0.81	57.023
1	20	CC_DT520DT521:DA554DA555_DD	-0.062	-0.798	3.353	-0.611	-2.44	34.753	-0.95	0.007	3.4	-4.078	1.021	34.841
1	21	CC_DT521DT522:DA553DA554_DD	-0.825	-0.554	3.093	0.918	-1.366	32.265	-0.767	1.636	3.089	-2.456	-1.65	32.306
1	22	CC_DT522DC523:DG552DA553_DD	1.052	1.428	3.138	4.717	3.907	39.402	1.644	-0.999	3.358	5.752	-6.945	39.856

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.