1TFW: Base Pair Morphology Parameters

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As of 18-May-2022 number of released structures: 12082

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NDB ID: PR0128 PDB ID: 1TFW

Base Pair Morphology Parameters

CSV Format

Model Number	Pair Number	Pair Name	Shear	Stretch	Stagger	Buckle	Propellor	Opening
1	5	E_A5:U68_H	-0.008	-0.159	-0.171	-1.888	-20.262	-3.424
1	2	E_C2:G71_H	0.06	-0.176	0.087	10.285	-17.338	-3.884
1	7	E_C7:G66_H	1.09	-0.012	0.265	8.508	-11.662	3.366
1	8	E_C8:G65_H	0.687	0.103	0.031	5.355	-18.754	9.461
1	10	E_C10:G63_H	0.248	0.137	0.33	-2.387	-20.707	4.499
1	1	E_G1:C72_H	-0.312	-0.171	0.686	4.773	-15.003	-1.581
1	3	E_G3:C70_H	-0.372	-0.214	0.449	2.879	-16.18	-1.924
1	4	E_G4:C69_H	-0.491	-0.076	0.407	2.411	-13.731	-0.703
1	9	E_G9:C64_H	-0.62	-0.083	0.407	-7.674	-19.013	0.866
1	6	E_U6:A67_H	0.811	-0.058	-0.005	1.287	-17.855	8.889
1	15	F_A5:U68_I	-0.263	-0.044	0.758	4.106	-18.201	3.807
1	12	F_C2:G71_I	0.199	-0.099	0.197	11.702	-18.893	-3.518
1	16	F_C7:G66_I	1.155	0.048	0.638	-0.145	-12.934	9.21
1	17	F_C8:G65_I	0.921	-0.246	-0.342	8.206	-18.725	-1.654
1	19	F_C10:G63_I	0.341	0.134	0.744	1.596	-16.581	9.812
1	11	F_G1:C72_I	-0.337	-0.26	1.006	11.449	-9.512	-6.88
1	13	F_G3:C70_I	-0.776	0.122	0.581	0.676	-14.329	8.133
1	14	F_G4:C69_I	0.123	0.07	0.177	-0.887	-20.313	-9.085
1	18	F_G9:C64_I	0.288	0.078	0.009	-9.153	-16.082	4.812
1	23	G_A6:U67_J	-0.026	-0.125	0.428	7.567	-14.822	0.24
1	29	G_A12:C61_J	-0.025	-0.248	0.196	11.209	-5.271	-12.031
1	20	G_C3:G70_J	0.229	0.26	0.167	9.145	-19.422	2.943
1	25	G_C8:G65_J	0.285	-0.362	0.039	2.622	-14.751	-6.789
1	26	G_C9:G64_J	0.331	-0.264	0.285	-1.064	-14.867	-0.8
1	28	G_C11:G62_J	0.307	-0.16	0.571	-10.131	-13.06	0.725
1	21	G_G4:C69_J	-0.138	-0.199	0.182	-10.05	-22.886	-1.309
1	22	G_G5:C68_J	-0.054	-0.199	0.238	-7.356	-11.111	-1.474
1	27	G_G10:C63_J	-0.148	-0.201	0.281	-4.234	-16.455	-1.958
1	24	G_U7:A66_J	0.092	-0.167	-0.014	5.193	-20.861	-3.161

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.