A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 18-May-2022 number of released structures: 12082
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NDB ID: PR0128  PDB ID: 1TFW 


Base Pair Morphology Parameters

CSV Format

Model NumberPair NumberPair NameShearStretchStaggerBucklePropellorOpening
15E_A5:U68_H-0.008-0.159-0.171-1.888-20.262-3.424
12E_C2:G71_H0.06-0.1760.08710.285-17.338-3.884
17E_C7:G66_H1.09-0.0120.2658.508-11.6623.366
18E_C8:G65_H0.6870.1030.0315.355-18.7549.461
110E_C10:G63_H0.2480.1370.33-2.387-20.7074.499
11E_G1:C72_H-0.312-0.1710.6864.773-15.003-1.581
13E_G3:C70_H-0.372-0.2140.4492.879-16.18-1.924
14E_G4:C69_H-0.491-0.0760.4072.411-13.731-0.703
19E_G9:C64_H-0.62-0.0830.407-7.674-19.0130.866
16E_U6:A67_H0.811-0.058-0.0051.287-17.8558.889
115F_A5:U68_I-0.263-0.0440.7584.106-18.2013.807
112F_C2:G71_I0.199-0.0990.19711.702-18.893-3.518
116F_C7:G66_I1.1550.0480.638-0.145-12.9349.21
117F_C8:G65_I0.921-0.246-0.3428.206-18.725-1.654
119F_C10:G63_I0.3410.1340.7441.596-16.5819.812
111F_G1:C72_I-0.337-0.261.00611.449-9.512-6.88
113F_G3:C70_I-0.7760.1220.5810.676-14.3298.133
114F_G4:C69_I0.1230.070.177-0.887-20.313-9.085
118F_G9:C64_I0.2880.0780.009-9.153-16.0824.812
123G_A6:U67_J-0.026-0.1250.4287.567-14.8220.24
129G_A12:C61_J-0.025-0.2480.19611.209-5.271-12.031
120G_C3:G70_J0.2290.260.1679.145-19.4222.943
125G_C8:G65_J0.285-0.3620.0392.622-14.751-6.789
126G_C9:G64_J0.331-0.2640.285-1.064-14.867-0.8
128G_C11:G62_J0.307-0.160.571-10.131-13.060.725
121G_G4:C69_J-0.138-0.1990.182-10.05-22.886-1.309
122G_G5:C68_J-0.054-0.1990.238-7.356-11.111-1.474
127G_G10:C63_J-0.148-0.2010.281-4.234-16.455-1.958
124G_U7:A66_J0.092-0.167-0.0145.193-20.861-3.161

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.