1TFW: Base Pair Morphology Step Parameters

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As of 18-May-2022 number of released structures: 12082

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NDB ID: PR0128 PDB ID: 1TFW

Base Pair Morphology Step Parameters

CSV Format

Model Number	Step Number	Step Name	Shift	Slide	Rise	Tilt	Roll	Twist	X-Displacement	Y-Displacement	Helical Rise	Inclination	Tip	Helical Twist
1	5	EE_A5U6:A67U68_HH	0.59	-0.913	3.102	0.574	9.713	34.448	-2.767	-0.885	2.761	16.01	-0.946	35.756
1	2	EE_C2G3:C70G71_HH	0.265	-1.709	3.225	-1.722	10.057	31.261	-4.583	-0.735	2.55	18.07	3.094	32.845
1	7	EE_C7C8:G65G66_HH	-0.099	-1.845	3.211	2.725	8.663	29.821	-4.93	0.654	2.568	16.363	-5.146	31.143
1	8	EE_C8G9:C64G65_HH	-0.335	-1.952	3.322	-4.463	11.958	25.37	-6.461	-0.239	2.22	25.287	9.438	28.353
1	1	EE_G1C2:G71C72_HH	-0.587	-1.287	3.175	-0.631	1.184	36.959	-2.183	0.843	3.143	1.866	0.995	36.983
1	3	EE_G3G4:C69C70_HH	-0.364	-1.479	3.092	-1.836	5.345	33.13	-3.357	0.356	2.841	9.289	3.192	33.595
1	4	EE_G4A5:U68C69_HH	-0.143	-0.97	3.377	3.142	8.171	36.051	-2.621	0.647	3.069	12.968	-4.986	37.064
1	9	EE_G9C10:G63C64_HH	-0.447	-1.885	3.119	-2.132	2.429	29.456	-4.165	0.452	2.981	4.758	4.177	29.629
1	6	EE_U6C7:G66A67_HH	-0.213	-1.655	3.104	-3.213	4.928	30.531	-3.951	-0.164	2.816	9.251	6.03	31.08
1	14	FF_A5C7:G66U68_II	0.627	-3.125	6.428	-0.516	8.749	70.309	-3.28	-0.575	6.05	7.568	0.446	70.783
1	11	FF_C2G3:C70G71_II	0.604	-1.833	3.18	-1.923	10.803	28.35	-5.384	-1.489	2.298	21.084	3.754	30.358
1	15	FF_C7C8:G65G66_II	-0.838	-1.601	2.903	5.583	4.555	27.89	-4.06	2.717	2.406	9.256	-11.345	28.788
1	16	FF_C8G9:C64G65_II	0.059	-1.828	3.537	-0.801	17.049	30.8	-5.445	-0.211	2.247	29.436	1.384	35.112
1	10	FF_G1C2:G71C72_II	-0.262	-1.405	3.275	3.94	1.404	38.841	-2.269	0.862	3.184	2.104	-5.904	39.057
1	12	FF_G3G4:C69C70_II	-1.072	-1.428	3.159	-0.615	5.854	38.46	-2.811	1.539	2.934	8.823	0.928	38.891
1	13	FF_G4A5:U68C69_II	0.374	-1.247	2.912	-4.724	7.182	30.731	-3.369	-1.403	2.481	13.23	8.702	31.883
1	17	FF_G9C10:G63C64_II	-0.01	-1.564	2.971	-6.646	3.591	27.02	-3.972	-1.358	2.671	7.501	13.883	28.037
1	21	GG_A6U7:A66U67_JJ	-0.439	-1.143	3.331	2.061	7.42	33.706	-3.047	1.051	2.989	12.593	-3.498	34.549
1	18	GG_C3G4:C69G70_JJ	0.497	-2.042	3.331	1.912	14.89	32.071	-5.33	-0.567	2.221	25.292	-3.248	35.327
1	23	GG_C8C9:G64G65_JJ	0.477	-1.493	3.312	1.092	4.994	33.966	-3.297	-0.641	3.081	8.488	-1.856	34.338
1	24	GG_C9G10:C63G64_JJ	-0.255	-1.61	3.102	0.207	8.597	31.72	-4.154	0.483	2.587	15.378	-0.37	32.836
1	26	GG_C11A12:C61G62_JJ	-0.868	-0.727	2.741	3.364	7.781	28.689	-2.693	2.238	2.352	15.286	-6.609	29.89
1	19	GG_G4G5:C68C69_JJ	-0.855	-2.453	2.969	-2.301	10.094	23.304	-7.787	1.431	1.838	23.555	5.369	25.472
1	20	GG_G5A6:U67C68_JJ	0.229	-0.929	2.952	-2.711	5.581	30.055	-2.716	-0.9	2.709	10.619	5.16	30.674
1	25	GG_G10C11:G62C63_JJ	0.309	-1.147	3.407	-0.249	6.537	37.273	-2.621	-0.509	3.166	10.131	0.386	37.822
1	22	GG_U7C8:G65A66_JJ	-0.108	-1.122	3.267	-0.223	5.521	35.84	-2.556	0.143	3.066	8.905	0.36	36.25

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.