1TFY: Base Pair Morphology Parameters

A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 18-May-2022 number of released structures: 12082

Search for released structures

NDB ID: PR0129 PDB ID: 1TFY

Base Pair Morphology Parameters

CSV Format

Model Number	Pair Number	Pair Name	Shear	Stretch	Stagger	Buckle	Propellor	Opening
1	5	E_A5:U68_H	0.882	-0.143	-0.384	-7.645	-17.594	-4.339
1	7	E_A7:U66_H	1.146	0.036	0.702	-6.936	-22.064	5.521
1	2	E_C2:G71_H	0.776	-0.334	0.648	2.28	-19.471	1.517
1	9	E_C9:G64_H	-0.472	-0.016	0.707	-4.615	-12.271	-17.658
1	10	E_C10:G63_H	-0.919	0.008	0.577	6.934	-18.495	2.594
1	1	E_G1:C72_H	-0.29	0.18	0.83	8.366	-14.381	-1.947
1	3	E_G3:C70_H	-0.714	0.117	1.237	12.204	-14.925	9.671
1	4	E_G4:C69_H	-0.143	0.059	0.023	-0.403	-16.492	-5.985
1	11	E_G11:C62_H	0.843	-0.075	-0.49	-23.099	-31.403	1.243
1	6	E_U6:A67_H	0.831	-0.433	-0.386	-3.376	-18.514	-3.971
1	8	E_U8:A65_H	0.599	-0.11	0.021	4.92	-25.633	6.111
1	16	F_A5:U68_I	0.337	-0.021	-0.378	-3.743	-21.302	-3.116
1	18	F_A7:U66_I	0.303	0.414	1.151	-0.022	-16.29	14.138
1	13	F_C2:G71_I	-0.419	-0.3	1.058	2.742	-14.177	-0.19
1	20	F_C9:G64_I	0.368	0.012	0.209	-8.012	-12.623	1.583
1	21	F_C10:G63_I	-0.641	-0.391	1.342	0.049	-1.649	6.068
1	12	F_G1:C72_I	0.151	-0.07	1.42	10.747	-13.783	-2.206
1	14	F_G3:C70_I	-1.472	0.008	1.153	4.691	-25.24	10.299
1	15	F_G4:C69_I	-0.651	-0.033	0.137	1.257	-16.259	-0.354
1	22	F_G11:C62_I	0.212	-0.374	-0.509	-1.454	-22.288	8.869
1	17	F_U6:A67_I	0.807	-0.085	-0.713	1.324	-21.114	-9.29
1	19	F_U8:A65_I	1.657	-0.252	0.573	-1.795	-17.326	4.182
1	24	G_A6:U67_J	-0.74	0.026	0.029	8.624	-20.395	3.884
1	30	G_A12:C61_J	-1.147	-0.371	-0.245	-9.844	-19.879	-5.479
1	26	G_C8:G65_J	1.253	-0.359	0.099	0.248	-23.796	2.978
1	27	G_C9:G64_J	0.066	0.018	0.496	4.168	-13.618	2.848
1	29	G_C11:G62_J	1.334	-0.399	-0.102	-6.942	-15.702	0.264
1	23	G_G5:C68_J	0.99	0.202	-0.124	-17.33	-2.697	1.905
1	28	G_G10:C63_J	-0.632	-0.263	-0.679	-15.413	-26.257	2.298
1	25	G_U7:A66_J	1.018	-0.571	-0.194	3.962	-14.872	-14.958

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.