A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 18-May-2022 number of released structures: 12082
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NDB ID: PR0129  PDB ID: 1TFY 


Base Pair Morphology Parameters

CSV Format

Model NumberPair NumberPair NameShearStretchStaggerBucklePropellorOpening
15E_A5:U68_H0.882-0.143-0.384-7.645-17.594-4.339
17E_A7:U66_H1.1460.0360.702-6.936-22.0645.521
12E_C2:G71_H0.776-0.3340.6482.28-19.4711.517
19E_C9:G64_H-0.472-0.0160.707-4.615-12.271-17.658
110E_C10:G63_H-0.9190.0080.5776.934-18.4952.594
11E_G1:C72_H-0.290.180.838.366-14.381-1.947
13E_G3:C70_H-0.7140.1171.23712.204-14.9259.671
14E_G4:C69_H-0.1430.0590.023-0.403-16.492-5.985
111E_G11:C62_H0.843-0.075-0.49-23.099-31.4031.243
16E_U6:A67_H0.831-0.433-0.386-3.376-18.514-3.971
18E_U8:A65_H0.599-0.110.0214.92-25.6336.111
116F_A5:U68_I0.337-0.021-0.378-3.743-21.302-3.116
118F_A7:U66_I0.3030.4141.151-0.022-16.2914.138
113F_C2:G71_I-0.419-0.31.0582.742-14.177-0.19
120F_C9:G64_I0.3680.0120.209-8.012-12.6231.583
121F_C10:G63_I-0.641-0.3911.3420.049-1.6496.068
112F_G1:C72_I0.151-0.071.4210.747-13.783-2.206
114F_G3:C70_I-1.4720.0081.1534.691-25.2410.299
115F_G4:C69_I-0.651-0.0330.1371.257-16.259-0.354
122F_G11:C62_I0.212-0.374-0.509-1.454-22.2888.869
117F_U6:A67_I0.807-0.085-0.7131.324-21.114-9.29
119F_U8:A65_I1.657-0.2520.573-1.795-17.3264.182
124G_A6:U67_J-0.740.0260.0298.624-20.3953.884
130G_A12:C61_J-1.147-0.371-0.245-9.844-19.879-5.479
126G_C8:G65_J1.253-0.3590.0990.248-23.7962.978
127G_C9:G64_J0.0660.0180.4964.168-13.6182.848
129G_C11:G62_J1.334-0.399-0.102-6.942-15.7020.264
123G_G5:C68_J0.990.202-0.124-17.33-2.6971.905
128G_G10:C63_J-0.632-0.263-0.679-15.413-26.2572.298
125G_U7:A66_J1.018-0.571-0.1943.962-14.872-14.958

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.