1TFY: Base Pair Morphology Step Parameters

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NDB ID: PR0129 PDB ID: 1TFY

Base Pair Morphology Step Parameters

CSV Format

Model Number	Step Number	Step Name	Shift	Slide	Rise	Tilt	Roll	Twist	X-Displacement	Y-Displacement	Helical Rise	Inclination	Tip	Helical Twist
1	5	EE_A5U6:A67U68_HH	-0.028	-1.204	3.236	0.085	4.061	35.189	-2.557	0.058	3.082	6.689	-0.139	35.416
1	7	EE_A7U8:A65U66_HH	-0.248	-2.087	2.912	6.023	5.18	24.325	-5.919	1.96	2.298	11.895	-13.829	25.571
1	2	EE_C2G3:C70G71_HH	0.178	-1.909	2.412	-4.347	9.947	25.935	-5.409	-1.012	1.54	21.028	9.19	28.079
1	9	EE_C9C10:G63G64_HH	0.484	-2.429	2.818	0.883	1.121	24.456	-6.018	-0.91	2.721	2.643	-2.082	24.497
1	10	EE_C10G11:C62G63_HH	0.069	-1.091	4.089	8.162	14.033	42.758	-2.895	0.776	3.538	18.471	-10.743	45.6
1	1	EE_G1C2:G71C72_HH	-0.025	-1.339	3.344	2.68	8.529	40.598	-2.779	0.315	3.008	12.115	-3.806	41.53
1	3	EE_G3G4:C69C70_HH	-1.102	-1.919	3.422	2.073	6.112	34.493	-4.089	2.135	2.979	10.197	-3.458	35.074
1	4	EE_G4A5:U68C69_HH	-0.153	-1.293	3.403	2.494	8.211	38.792	-2.862	0.516	3.062	12.181	-3.7	39.694
1	6	EE_U6A7:U66A67_HH	0.348	-1.425	3.31	-4.338	13.144	34.595	-3.868	-1.085	2.559	21.087	6.96	37.183
1	8	EE_U8C9:G64A65_HH	-1.153	-2.402	3.604	-8.77	2.362	28.399	-5.229	0.18	3.586	4.667	17.323	29.788
1	15	FF_A5U6:A67U68_II	-0.445	-1.052	3.166	0.214	5.992	32.193	-2.837	0.825	2.925	10.69	-0.382	32.732
1	17	FF_A7U8:A65U66_II	-0.523	-1.652	3.359	3.443	0.216	36.234	-2.676	1.325	3.288	0.347	-5.521	36.393
1	12	FF_C2G3:C70G71_II	0.36	-2.015	2.542	-0.981	10.298	29.914	-4.988	-0.783	1.757	19.24	1.834	31.614
1	19	FF_C9C10:G63G64_II	-0.514	-2.217	3.029	-12.439	5.654	20.718	-6.692	-2.152	2.294	13.936	30.656	24.777
1	20	FF_C10G11:C62G63_II	0.298	-1.104	3.493	11.284	8.988	44.302	-2.196	0.623	3.204	11.56	-14.513	46.479
1	11	FF_G1C2:G71C72_II	-0.197	-1.848	3.277	1.001	7.157	33.333	-4.225	0.486	2.824	12.298	-1.721	34.085
1	13	FF_G3G4:C69C70_II	-0.927	-1.505	3.574	-1.353	0.785	34.24	-2.689	1.34	3.573	1.332	2.297	34.275
1	14	FF_G4A5:U68C69_II	-0.315	-1.199	3.344	3.188	8.012	38.467	-2.712	0.839	3.01	11.978	-4.766	39.386
1	16	FF_U6A7:U66A67_II	1.263	-1.76	3.065	-9.319	11.089	33.112	-4.111	-3.106	1.978	18.4	15.463	36.06
1	18	FF_U8C9:G64A65_II	-0.755	-2.217	3.025	4.603	7.261	27.389	-5.819	2.377	2.222	14.876	-9.431	28.682
1	22	GG_A6U7:A66U67_JJ	-0.719	-1.452	3.53	-2.169	9.951	42.145	-2.974	0.754	3.155	13.601	2.965	43.304
1	24	GG_C8C9:G64G65_JJ	-0.122	-1.273	3.255	-0.698	5.208	30.18	-3.402	0.098	3.001	9.908	1.328	30.623
1	25	GG_C9G10:C63G64_JJ	-0.054	-1.001	3.639	8.469	14.101	33.215	-3.588	1.293	2.898	22.997	-13.812	36.962
1	27	GG_C11A12:C61G62_JJ	-0.862	-1.108	3.277	0.687	20.776	15.336	-7.344	2.093	1.05	53.935	-1.784	25.782
1	21	GG_G5A6:U67C68_JJ	0.329	-0.67	2.778	0.382	12.78	19.508	-5.136	-0.712	1.973	33.463	-1.0	23.29
1	26	GG_G10C11:G62C63_JJ	-0.278	-0.758	3.076	-5.885	8.553	45.846	-1.607	-0.102	2.91	10.816	7.442	46.945
1	23	GG_U7C8:G65A66_JJ	0.697	-1.142	3.445	2.644	1.039	34.583	-2.083	-0.741	3.452	1.744	-4.439	34.696

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.