A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 5-Aug-2020 number of released structures: 10886
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NDB ID: PD0575  PDB ID: 1U3E 


Base Pair Morphology Parameters

CSV Format

Model NumberPair NumberPair NameShearStretchStaggerBucklePropellorOpening
12A_DA4:DT34_C-0.091-0.081-0.05813.404-2.5568.896
13A_DA5:DT33_C0.1290.028-0.0839.748-31.7090.572
16A_DA8:DT30_C0.069-0.0740.86312.971-9.955-2.334
111A_DA13:DT25_C-0.187-0.004-0.287.5218.943-0.231
112A_DA14:DT24_C0.05-0.033-0.2523.359-0.61511.544
118A_DA20:DT18_B0.268-0.159-0.788-14.7222.963-6.678
121A_DA23:DT15_B-0.063-0.087-0.0289.0-12.19-1.296
122A_DA24:DT14_B0.171-0.0660.1324.805-13.9880.364
128A_DA30:DT8_B-0.007-0.112-0.1639.047-5.3867.461
132A_DA35:DT3_B0.8020.395-0.1481.493-22.8598.922
18A_DC10:DG28_C0.102-0.208-0.8246.723-13.4036.862
19A_DC11:DG27_C-0.226-0.131-0.586-12.1021.0772.053
113A_DC15:DG23_C0.3220.188-0.99338.942-17.7884.514
115A_DC17:DG21_B0.048-0.184-0.29-6.109-1.9-4.844
117A_DC19:DG19_B0.041-0.049-0.74918.6462.792-0.036
120A_DC22:DG16_B0.0670.0090.1483.482-3.0-1.234
125A_DC27:DG11_B0.241-0.201-0.617-0.8887.9290.583
126A_DC28:DG10_B-0.028-0.0910.3792.687-3.941-6.177
127A_DC29:DG9_B0.19-0.073-0.1815.425-5.67-3.193
129A_DC31:DG7_B0.198-0.179-0.61613.263-11.3542.894
11A_DG2:DC36_C-0.0730.3031.62363.64-8.198-3.084
15A_DG7:DC31_C-0.318-0.0340.9127.490.0735.979
17A_DG9:DC29_C-0.326-0.232-0.681.422-16.0148.074
114A_DG16:DC22_B0.099-0.144-0.486-3.904-6.7560.014
119A_DG21:DC17_B-0.0280.0010.3191.157-2.194-1.824
130A_DG32:DC6_B-0.137-0.0810.2566.009-5.542-2.543
133A_DG36:DC2_B-0.099-0.059-0.341-19.32-18.0860.615
14A_DT6:DA32_C0.027-0.193-0.41513.2-29.6247.889
110A_DT12:DA26_C-0.139-0.043-0.6410.137-7.8-1.215
116A_DT18:DA20_B-0.101-0.011-0.1794.6412.478-4.664
123A_DT25:DA13_B0.137-0.05-0.002-2.905-7.9230.573
124A_DT26:DA12_B0.063-0.02-0.168-6.583-10.871-1.839
131A_DT33:DA5_B1.219-0.354-0.1456.682-4.3536.89

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.