A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 29-Jun-2022 number of released structures: 12153
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NDB ID: PD0585  PDB ID: 1UA0 


Base Pair Morphology Parameters

CSV Format

Model NumberPair NumberPair NameShearStretchStaggerBucklePropellorOpening
14B_DA24:DT9_C0.151-0.106-0.261-4.159-13.051-1.502
11B_DG21:DC12_C-1.089-0.324-0.152-12.597-1.5572.543
12B_DG22:DC11_C0.6240.0830.165-5.815-16.8879.668
13B_DG23:DC10_C-0.665-0.033-0.121-5.995-19.7635.078
16B_DG26:DC7_C-0.062-0.145-0.27411.46910.985-0.476
17B_DG27:DC6_C-0.155-0.123-0.0846.952-11.7925.641
19B_DG29:DC4_C-0.291-0.242-0.1857.966-9.5413.361
15B_DT25:DA8_C0.071-0.008-0.032-1.135-6.1241.684
18B_DT28:DA5_C-0.0760.009-0.25612.798-5.8426.909

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.