1VBY: Base Pair Morphology Parameters

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As of 18-May-2022 number of released structures: 12082

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NDB ID: PR0115 PDB ID: 1VBY

Base Pair Morphology Parameters

CSV Format

Model Number	Pair Number	Pair Name	Shear	Stretch	Stagger	Buckle	Propellor	Opening
1	20	B_A116:U167_B	-0.352	-0.214	-0.361	-0.598	-4.106	-4.309
1	10	B_A143:G162_B	0.28	1.17	-0.214	-1.594	-14.376	-7.021
1	12	B_A145:U160_B	0.015	-0.162	-0.079	3.202	-13.595	3.023
1	17	B_C113:G170_B	-0.156	-0.177	0.137	4.887	-12.956	-3.091
1	18	B_C114:G169_B	0.335	-0.266	1.041	-3.496	-7.509	0.497
1	19	B_C115:G168_B	-0.414	-0.198	0.274	1.178	-10.735	-4.11
1	22	B_C118:G129_B	0.124	-0.312	0.722	-4.638	-18.84	-2.67
1	23	B_C119:G128_B	-0.176	-0.304	1.043	-14.313	-14.055	-8.401
1	2	B_C132:G106_B	0.726	-0.478	0.16	-12.92	-8.212	2.219
1	3	B_C133:G105_B	0.256	-0.124	0.595	-10.449	-3.693	6.359
1	6	B_C136:G102_B	-0.048	0.017	-0.071	0.221	1.451	7.181
1	11	B_C144:G161_B	0.195	-0.119	0.559	6.248	-15.362	1.619
1	13	B_C146:G159_B	0.296	-0.233	0.05	2.818	-13.306	1.624
1	14	B_C147:G158_B	0.296	-0.192	0.526	-1.514	-2.278	0.019
1	15	B_G111:C172_B	-0.058	0.083	0.171	-4.216	-11.415	4.942
1	21	B_G117:C130_B	-0.106	-0.006	0.46	4.101	-15.484	1.508
1	1	B_G131:C107_B	-0.381	-0.1	-0.462	-10.114	-1.055	2.891
1	4	B_G134:C104_B	-0.355	0.082	-0.316	-0.612	-1.95	4.35
1	5	B_G135:C103_B	0.112	0.275	-0.766	-7.443	0.112	7.41
1	8	B_G138:C122_B	0.036	0.048	-0.182	-7.276	-11.343	1.166
1	9	B_G139:C121_B	-0.052	-0.165	-0.098	-13.146	-24.493	-5.815
1	16	B_U112:A171_B	-0.022	-0.082	0.208	0.922	-3.911	-4.609
1	7	B_U137:G101_B	2.648	-0.714	-0.654	5.292	-10.543	0.482
1	24	B_U155:C157_B	-5.125	0.127	0.694	2.287	12.727	43.483

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.