A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 18-May-2022 number of released structures: 12082
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NDB ID: PR0115  PDB ID: 1VBY 


Base Pair Morphology Parameters

CSV Format

Model NumberPair NumberPair NameShearStretchStaggerBucklePropellorOpening
120B_A116:U167_B-0.352-0.214-0.361-0.598-4.106-4.309
110B_A143:G162_B0.281.17-0.214-1.594-14.376-7.021
112B_A145:U160_B0.015-0.162-0.0793.202-13.5953.023
117B_C113:G170_B-0.156-0.1770.1374.887-12.956-3.091
118B_C114:G169_B0.335-0.2661.041-3.496-7.5090.497
119B_C115:G168_B-0.414-0.1980.2741.178-10.735-4.11
122B_C118:G129_B0.124-0.3120.722-4.638-18.84-2.67
123B_C119:G128_B-0.176-0.3041.043-14.313-14.055-8.401
12B_C132:G106_B0.726-0.4780.16-12.92-8.2122.219
13B_C133:G105_B0.256-0.1240.595-10.449-3.6936.359
16B_C136:G102_B-0.0480.017-0.0710.2211.4517.181
111B_C144:G161_B0.195-0.1190.5596.248-15.3621.619
113B_C146:G159_B0.296-0.2330.052.818-13.3061.624
114B_C147:G158_B0.296-0.1920.526-1.514-2.2780.019
115B_G111:C172_B-0.0580.0830.171-4.216-11.4154.942
121B_G117:C130_B-0.106-0.0060.464.101-15.4841.508
11B_G131:C107_B-0.381-0.1-0.462-10.114-1.0552.891
14B_G134:C104_B-0.3550.082-0.316-0.612-1.954.35
15B_G135:C103_B0.1120.275-0.766-7.4430.1127.41
18B_G138:C122_B0.0360.048-0.182-7.276-11.3431.166
19B_G139:C121_B-0.052-0.165-0.098-13.146-24.493-5.815
116B_U112:A171_B-0.022-0.0820.2080.922-3.911-4.609
17B_U137:G101_B2.648-0.714-0.6545.292-10.5430.482
124B_U155:C157_B-5.1250.1270.6942.28712.72743.483

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.